Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30699
         (549 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g17390.1 68417.m02606 60S ribosomal protein L15 (RPL15B)            74   5e-14
At4g16720.1 68417.m02526 60S ribosomal protein L15 (RPL15A)            74   5e-14
At4g00220.1 68417.m00023 LOB domain protein 30 / lateral organ b...    30   1.2  
At2g39560.1 68415.m04853 expressed protein                             28   4.7  
At4g13010.1 68417.m02030 oxidoreductase, zinc-binding dehydrogen...    27   6.2  
At5g26630.1 68418.m03177 MADS-box protein (AGL35) homeotic prote...    27   8.3  

>At4g17390.1 68417.m02606 60S ribosomal protein L15 (RPL15B)
          Length = 204

 Score = 74.1 bits (174), Expect = 5e-14
 Identities = 40/116 (34%), Positives = 66/116 (56%)
 Frame = +1

Query: 160 PTTPDKALTLDYPTKQAYLVFTIPLPRARPQAPVSNAGHLSAIPTSMLSTSFKPTRNLQS 339
           PT PDKA  L Y  KQ ++V+ + + R   + PV   G +   PT+   T  K  R+ +S
Sbjct: 42  PTRPDKARRLGYKAKQGFVVYRVRVRRGGRKRPVPK-GIVYGKPTNQGVTQLKFQRSKRS 100

Query: 340 IAQATCLSVLPVLSIYSALTGFHNILHTRYFQVILVDPSHNSIRLDPKVNWILNAV 507
           +A+      L  L + ++     +  + +Y+++ILVDP+HN++R DP++NWI N V
Sbjct: 101 VAEERAGRKLGGLRVVNSYWLNEDSTY-KYYEIILVDPAHNAVRNDPRINWICNPV 155


>At4g16720.1 68417.m02526 60S ribosomal protein L15 (RPL15A)
          Length = 204

 Score = 74.1 bits (174), Expect = 5e-14
 Identities = 40/116 (34%), Positives = 66/116 (56%)
 Frame = +1

Query: 160 PTTPDKALTLDYPTKQAYLVFTIPLPRARPQAPVSNAGHLSAIPTSMLSTSFKPTRNLQS 339
           PT PDKA  L Y  KQ ++V+ + + R   + PV   G +   PT+   T  K  R+ +S
Sbjct: 42  PTRPDKARRLGYKAKQGFVVYRVRVRRGGRKRPVPK-GIVYGKPTNQGVTQLKFQRSKRS 100

Query: 340 IAQATCLSVLPVLSIYSALTGFHNILHTRYFQVILVDPSHNSIRLDPKVNWILNAV 507
           +A+      L  L + ++     +  + +Y+++ILVDP+HN++R DP++NWI N V
Sbjct: 101 VAEERAGRKLGGLRVVNSYWLNEDSTY-KYYEIILVDPAHNAVRNDPRINWICNPV 155


>At4g00220.1 68417.m00023 LOB domain protein 30 / lateral organ
           boundaries domain protein 30 (LBD30) identical to LOB
           DOMAIN 30 [Arabidopsis thaliana] GI:16660632; supported
           by full-length cDNA gi:16660631
          Length = 228

 Score = 29.9 bits (64), Expect = 1.2
 Identities = 19/47 (40%), Positives = 28/47 (59%), Gaps = 1/47 (2%)
 Frame = +1

Query: 205 QAYLVFTIPLPRARP-QAPVSNAGHLSAIPTSMLSTSFKPTRNLQSI 342
           QA+L  T+ LP+ +P Q PVS++G L A+  + L T      +L SI
Sbjct: 115 QAHLA-TLELPQPQPPQVPVSSSGSLQALSITDLPTISPSVYDLSSI 160


>At2g39560.1 68415.m04853 expressed protein
          Length = 233

 Score = 27.9 bits (59), Expect = 4.7
 Identities = 15/50 (30%), Positives = 24/50 (48%)
 Frame = +3

Query: 51  IFNTCIRKN*PILCLFSSPLTLWQYRHLTPMAPLSHSHNPRQSPNTRLPY 200
           +  +C  +   I  LF S     ++  L   +PLS SH+P  SP +R  +
Sbjct: 166 LMESCNGRKEEISSLFESSSDA-EFNRLVRSSPLSSSHSPSSSPLSRFKF 214


>At4g13010.1 68417.m02030 oxidoreductase, zinc-binding dehydrogenase
           family protein low similarity to probable NADP-dependent
           oxidoreductase (zeta-crystallin homolog) P1
           [SP|Q39172][gi:886428] and P2 [SP|Q39173][gi:886430];
           contains Pfam profile PF00107: oxidoreductase,
           zinc-binding dehydrogenase family
          Length = 329

 Score = 27.5 bits (58), Expect = 6.2
 Identities = 9/39 (23%), Positives = 19/39 (48%)
 Frame = +3

Query: 9   YTSATHC*HRVPTHIFNTCIRKN*PILCLFSSPLTLWQY 125
           Y +  HC + +P  +F   + +N  ++ +   P  +W Y
Sbjct: 222 YDAVVHCANGIPFSVFEPNLSENGKVIDITPGPNAMWTY 260


>At5g26630.1 68418.m03177 MADS-box protein (AGL35) homeotic protein
           boi1AP3, Brassica oleracea, EMBL:U67453; contains Pfam
           profile PF00319: SRF-type transcription factor
           (DNA-binding and dimerisation domain)
          Length = 218

 Score = 27.1 bits (57), Expect = 8.3
 Identities = 15/62 (24%), Positives = 33/62 (53%)
 Frame = +1

Query: 298 MLSTSFKPTRNLQSIAQATCLSVLPVLSIYSALTGFHNILHTRYFQVILVDPSHNSIRLD 477
           +L  + +P+  L  +A  T  SV+PV+ + S+  GF++ +  +    + +  + N + L+
Sbjct: 155 ILKRNNEPSSALVPVAAPTTSSVMPVVEMGSSSVGFYDKVRDQIQITLNMKQTTNDLDLN 214

Query: 478 PK 483
            K
Sbjct: 215 KK 216


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,025,834
Number of Sequences: 28952
Number of extensions: 279534
Number of successful extensions: 677
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 658
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 675
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1033331880
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)