Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30697
         (387 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ415419-1|CAC94468.1|  441|Tribolium castaneum transcription fa...    25   0.35 
DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome ad...    23   1.4  
AY043293-1|AAK96033.1|  523|Tribolium castaneum homeodomain tran...    22   1.8  
AF187069-1|AAF03889.1|  471|Tribolium castaneum proboscipedia or...    22   1.8  
EF592539-1|ABQ95985.1|  630|Tribolium castaneum beta-N-acetylglu...    21   3.2  
AM292337-1|CAL23149.2|  452|Tribolium castaneum gustatory recept...    21   4.3  
AM292364-1|CAL23176.2|  353|Tribolium castaneum gustatory recept...    20   7.4  
EF592537-1|ABQ95983.1|  593|Tribolium castaneum beta-N-acetylglu...    20   9.8  

>AJ415419-1|CAC94468.1|  441|Tribolium castaneum transcription
           factor protein.
          Length = 441

 Score = 24.6 bits (51), Expect = 0.35
 Identities = 17/43 (39%), Positives = 21/43 (48%)
 Frame = -3

Query: 169 TFTTESRH*YSSFSSMWFRQPSRGMNAVTFFPFLMSCTRTHLR 41
           TFT +    YS + S WF        AVT    L +CTRT L+
Sbjct: 221 TFTQQQTQ-YSQYGS-WFLPHQPIYPAVTATVQLSTCTRTTLK 261


>DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome
           adhesion molecule splicevariant 3.12.3.1 protein.
          Length = 1639

 Score = 22.6 bits (46), Expect = 1.4
 Identities = 8/11 (72%), Positives = 10/11 (90%)
 Frame = +2

Query: 167 GHAVGDIPGVR 199
           G AVGD+PG+R
Sbjct: 62  GTAVGDVPGLR 72


>AY043293-1|AAK96033.1|  523|Tribolium castaneum homeodomain
           transcription factor Maxillopediaprotein.
          Length = 523

 Score = 22.2 bits (45), Expect = 1.8
 Identities = 12/39 (30%), Positives = 19/39 (48%)
 Frame = -3

Query: 199 TNSGNVTDGVTFTTESRH*YSSFSSMWFRQPSRGMNAVT 83
           TN+  +T   +  TES   Y+SF   +  + S+   A T
Sbjct: 458 TNNAIMTPPASVQTESSDNYNSFHQFYSSESSQNQVAPT 496


>AF187069-1|AAF03889.1|  471|Tribolium castaneum proboscipedia
           ortholog protein.
          Length = 471

 Score = 22.2 bits (45), Expect = 1.8
 Identities = 12/39 (30%), Positives = 19/39 (48%)
 Frame = -3

Query: 199 TNSGNVTDGVTFTTESRH*YSSFSSMWFRQPSRGMNAVT 83
           TN+  +T   +  TES   Y+SF   +  + S+   A T
Sbjct: 406 TNNAIMTPPASVQTESSDNYNSFHQFYSSESSQNQVAPT 444


>EF592539-1|ABQ95985.1|  630|Tribolium castaneum
           beta-N-acetylglucosaminidase FDL protein.
          Length = 630

 Score = 21.4 bits (43), Expect = 3.2
 Identities = 9/26 (34%), Positives = 13/26 (50%)
 Frame = -3

Query: 385 FFFFFCCTQYLLCTRILHFMNL*TTR 308
           FFF FCC  + +        NL T++
Sbjct: 11  FFFSFCCILFFIYLYWQQTSNLTTSK 36


>AM292337-1|CAL23149.2|  452|Tribolium castaneum gustatory receptor
           candidate 16 protein.
          Length = 452

 Score = 21.0 bits (42), Expect = 4.3
 Identities = 7/19 (36%), Positives = 13/19 (68%)
 Frame = -1

Query: 384 FFFFFAVHNIYYVLGFYIL 328
           + FFF + ++ YV+  Y+L
Sbjct: 275 YVFFFHLSDVRYVMVVYLL 293


>AM292364-1|CAL23176.2|  353|Tribolium castaneum gustatory receptor
           candidate 43 protein.
          Length = 353

 Score = 20.2 bits (40), Expect = 7.4
 Identities = 9/37 (24%), Positives = 18/37 (48%)
 Frame = -1

Query: 387 FFFFFFAVHNIYYVLGFYIL*TYKQRASRQQVTYHNV 277
           +++ FF VH  Y V+  Y +    +++    +  H V
Sbjct: 116 YYYAFFGVHLAYGVVIIYSICVQTEKSVFDFLCRHTV 152


>EF592537-1|ABQ95983.1|  593|Tribolium castaneum
           beta-N-acetylglucosaminidase NAG2 protein.
          Length = 593

 Score = 19.8 bits (39), Expect = 9.8
 Identities = 9/28 (32%), Positives = 15/28 (53%)
 Frame = -3

Query: 382 FFFFCCTQYLLCTRILHFMNL*TTRFPT 299
           +++ C T    CTRI   ++  T  +PT
Sbjct: 30  WYWQCNTDEETCTRISSTVSRNTDTYPT 57


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 85,946
Number of Sequences: 336
Number of extensions: 1684
Number of successful extensions: 8
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 122,585
effective HSP length: 51
effective length of database: 105,449
effective search space used:  8119573
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)