Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV30697
(387 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_06_0466 - 34134138-34134278,34134355-34134481,34134558-341347... 89 9e-19
01_06_1253 - 35753546-35753686,35753759-35753885,35753970-357541... 89 9e-19
10_06_0053 - 10110617-10111271,10112023-10112417,10112565-101126... 81 3e-16
05_03_0026 + 7466017-7466034,7466340-7466405,7466572-7466833,746... 44 6e-05
10_05_0025 + 8215685-8215716,8215859-8215937,8216340-8216412,821... 27 3.9
12_01_0421 - 3321590-3323692 27 6.9
11_06_0186 + 21027581-21028825 27 6.9
11_05_0043 - 18561039-18562114,18562338-18562503 27 6.9
05_06_0102 - 25589011-25589181,25589269-25589496,25589589-255899... 27 6.9
06_02_0164 + 12498614-12498699,12498806-12498842,12499388-124995... 26 9.1
04_03_1015 - 21734381-21736534 26 9.1
>03_06_0466 -
34134138-34134278,34134355-34134481,34134558-34134713,
34135831-34135835
Length = 142
Score = 89.4 bits (212), Expect = 9e-19
Identities = 37/46 (80%), Positives = 42/46 (91%)
Frame = +3
Query: 3 KVGVEAKQPNSAIRKCVRVQLIKNGKKVTAFIPRDGCLNHIEENDE 140
K+G+EAKQPNSAIRKC RVQL+KNGKK+ AF+P DGCLN IEENDE
Sbjct: 53 KIGIEAKQPNSAIRKCARVQLVKNGKKIAAFVPNDGCLNFIEENDE 98
Score = 71.7 bits (168), Expect = 2e-13
Identities = 32/37 (86%), Positives = 36/37 (97%)
Frame = +2
Query: 146 VAGFGRKGHAVGDIPGVRFKVVKVANVSLLALYKEKR 256
+AGFGRKGHAVGDIPGVRFKVVKV+ VSLLAL+KEK+
Sbjct: 101 IAGFGRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKK 137
>01_06_1253 -
35753546-35753686,35753759-35753885,35753970-35754125,
35754761-35754853,35757132-35757265,35757339-35757465,
35757550-35757705,35758321-35758325
Length = 312
Score = 89.4 bits (212), Expect = 9e-19
Identities = 37/46 (80%), Positives = 42/46 (91%)
Frame = +3
Query: 3 KVGVEAKQPNSAIRKCVRVQLIKNGKKVTAFIPRDGCLNHIEENDE 140
K+G+EAKQPNSAIRKC RVQL+KNGKK+ AF+P DGCLN IEENDE
Sbjct: 53 KIGIEAKQPNSAIRKCARVQLVKNGKKIAAFVPNDGCLNFIEENDE 98
Score = 89.4 bits (212), Expect = 9e-19
Identities = 37/46 (80%), Positives = 42/46 (91%)
Frame = +3
Query: 3 KVGVEAKQPNSAIRKCVRVQLIKNGKKVTAFIPRDGCLNHIEENDE 140
K+G+EAKQPNSAIRKC RVQL+KNGKK+ AF+P DGCLN IEENDE
Sbjct: 223 KIGIEAKQPNSAIRKCARVQLVKNGKKIAAFVPNDGCLNFIEENDE 268
Score = 72.9 bits (171), Expect = 8e-14
Identities = 33/43 (76%), Positives = 37/43 (86%)
Frame = +2
Query: 146 VAGFGRKGHAVGDIPGVRFKVVKVANVSLLALYKEKRSDQDHR 274
+AGFGRKGHAVGDIPGVRFKVVKV+ VSLLAL+KEK+ R
Sbjct: 101 IAGFGRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKPSRR 143
Score = 71.7 bits (168), Expect = 2e-13
Identities = 32/37 (86%), Positives = 36/37 (97%)
Frame = +2
Query: 146 VAGFGRKGHAVGDIPGVRFKVVKVANVSLLALYKEKR 256
+AGFGRKGHAVGDIPGVRFKVVKV+ VSLLAL+KEK+
Sbjct: 271 IAGFGRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKK 307
>10_06_0053 -
10110617-10111271,10112023-10112417,10112565-10112650,
10112973-10113021,10114164-10114290,10114372-10114526,
10114730-10114948
Length = 561
Score = 81.0 bits (191), Expect = 3e-16
Identities = 33/45 (73%), Positives = 40/45 (88%)
Frame = +3
Query: 3 KVGVEAKQPNSAIRKCVRVQLIKNGKKVTAFIPRDGCLNHIEEND 137
K+G+EAKQPNSAI KC RVQL+KNGKK+ AF+P DGCLN I+EN+
Sbjct: 124 KIGIEAKQPNSAICKCARVQLVKNGKKIAAFVPNDGCLNFIKENE 168
>05_03_0026 +
7466017-7466034,7466340-7466405,7466572-7466833,
7467254-7467294
Length = 128
Score = 43.6 bits (98), Expect = 6e-05
Identities = 18/23 (78%), Positives = 21/23 (91%)
Frame = +2
Query: 146 VAGFGRKGHAVGDIPGVRFKVVK 214
++GFG KGHAVGDI GVRF+VVK
Sbjct: 71 ISGFGHKGHAVGDIRGVRFEVVK 93
>10_05_0025 +
8215685-8215716,8215859-8215937,8216340-8216412,
8216712-8216864,8217456-8217569,8217649-8217776,
8219004-8219099,8219479-8219601,8219694-8219810,
8219983-8220104,8220439-8220508
Length = 368
Score = 27.5 bits (58), Expect = 3.9
Identities = 11/34 (32%), Positives = 17/34 (50%)
Frame = -3
Query: 376 FFCCTQYLLCTRILHFMNL*TTRFPTAGHLSQCT 275
+FCC QY + I HF TR + ++ + T
Sbjct: 43 YFCCKQYDIILLIAHFYRALRTRMKSVRNIQKIT 76
>12_01_0421 - 3321590-3323692
Length = 700
Score = 26.6 bits (56), Expect = 6.9
Identities = 12/29 (41%), Positives = 19/29 (65%)
Frame = -3
Query: 301 TAGHLSQCTPMILVAPFLFVESEERHVGY 215
TAG++++CT M LVA ++ R +GY
Sbjct: 275 TAGYVTECTQMFLVARRNASDASLRALGY 303
>11_06_0186 + 21027581-21028825
Length = 414
Score = 26.6 bits (56), Expect = 6.9
Identities = 13/53 (24%), Positives = 26/53 (49%)
Frame = -2
Query: 341 DFTFYELINNALPDSRSLITMYTYDLGRSFSLCRERGETRWLLLPP*NELREC 183
+F F + I ++ P + I + ++ S+ R G+ +W LPP + +C
Sbjct: 165 NFLFSKAIVSSDPSGGNFIVVLIHNPHLQLSIARP-GDDKWTWLPPHKDYEDC 216
>11_05_0043 - 18561039-18562114,18562338-18562503
Length = 413
Score = 26.6 bits (56), Expect = 6.9
Identities = 15/35 (42%), Positives = 19/35 (54%)
Frame = +3
Query: 102 RDGCLNHIEENDEY*WRDSVVKVTPSVTFPEFVLR 206
RDG EE+DEY ++V V P +T VLR
Sbjct: 361 RDGGEEEEEESDEYCEWGAMVGVGPGLTIETMVLR 395
>05_06_0102 -
25589011-25589181,25589269-25589496,25589589-25589933,
25590406-25590777,25590957-25591049,25591150-25591401,
25592019-25593224
Length = 888
Score = 26.6 bits (56), Expect = 6.9
Identities = 13/34 (38%), Positives = 16/34 (47%)
Frame = -3
Query: 256 PFLFVESEERHVGYFYHLKTNSGNVTDGVTFTTE 155
PFLFV VG F+ +G VT T T +
Sbjct: 179 PFLFVGHRAAVVGAFFATDKKTGRVTGAYTITKD 212
>06_02_0164 +
12498614-12498699,12498806-12498842,12499388-12499544,
12499964-12500181,12500965-12501891
Length = 474
Score = 26.2 bits (55), Expect = 9.1
Identities = 13/41 (31%), Positives = 19/41 (46%)
Frame = -3
Query: 301 TAGHLSQCTPMILVAPFLFVESEERHVGYFYHLKTNSGNVT 179
+ G S C MI F+ E + +H LKT+ G +T
Sbjct: 48 SVGSCSPCNSMIYNESFVHTEDQTQHFQGSPELKTSRGKMT 88
>04_03_1015 - 21734381-21736534
Length = 717
Score = 26.2 bits (55), Expect = 9.1
Identities = 9/27 (33%), Positives = 19/27 (70%)
Frame = +3
Query: 30 NSAIRKCVRVQLIKNGKKVTAFIPRDG 110
+SA+ C + L+ +GK++ A++ R+G
Sbjct: 492 SSALAACANIFLLNHGKQIHAYMIRNG 518
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,795,367
Number of Sequences: 37544
Number of extensions: 182239
Number of successful extensions: 407
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 394
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 406
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 648814968
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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