Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30697
         (387 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_37381| Best HMM Match : Ribosomal_S12 (HMM E-Value=0)               95   1e-20
SB_33031| Best HMM Match : Ribosomal_S12 (HMM E-Value=0)               92   2e-19
SB_54786| Best HMM Match : Ribosomal_S12 (HMM E-Value=1.4e-12)         34   0.047
SB_4259| Best HMM Match : No HMM Matches (HMM E-Value=.)               30   0.76 
SB_9429| Best HMM Match : Pili_assembly_N (HMM E-Value=5.8)            27   5.3  
SB_51974| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.1  

>SB_37381| Best HMM Match : Ribosomal_S12 (HMM E-Value=0)
          Length = 413

 Score = 95.5 bits (227), Expect = 1e-20
 Identities = 42/46 (91%), Positives = 45/46 (97%)
 Frame = +3

Query: 3   KVGVEAKQPNSAIRKCVRVQLIKNGKKVTAFIPRDGCLNHIEENDE 140
           KVGVEAKQPNSAIRKCVRVQLIKNGKK+TAF+P DGCLN+IEENDE
Sbjct: 53  KVGVEAKQPNSAIRKCVRVQLIKNGKKITAFVPNDGCLNYIEENDE 98



 Score = 37.5 bits (83), Expect = 0.004
 Identities = 13/17 (76%), Positives = 17/17 (100%)
 Frame = +2

Query: 146 VAGFGRKGHAVGDIPGV 196
           ++GFGR+GHAVGDIPG+
Sbjct: 101 ISGFGRRGHAVGDIPGI 117


>SB_33031| Best HMM Match : Ribosomal_S12 (HMM E-Value=0)
          Length = 143

 Score = 91.9 bits (218), Expect = 2e-19
 Identities = 40/44 (90%), Positives = 43/44 (97%)
 Frame = +3

Query: 9   GVEAKQPNSAIRKCVRVQLIKNGKKVTAFIPRDGCLNHIEENDE 140
           GVEAKQPNSAIRKCVRVQLIKNGKK+TAF+P DGCLN+IEENDE
Sbjct: 56  GVEAKQPNSAIRKCVRVQLIKNGKKITAFVPNDGCLNYIEENDE 99



 Score = 72.9 bits (171), Expect = 8e-14
 Identities = 32/37 (86%), Positives = 37/37 (100%)
 Frame = +2

Query: 146 VAGFGRKGHAVGDIPGVRFKVVKVANVSLLALYKEKR 256
           ++GFGR+GHAVGDIPGVRFKVVKVANVSLLAL+KEK+
Sbjct: 102 ISGFGRRGHAVGDIPGVRFKVVKVANVSLLALFKEKK 138


>SB_54786| Best HMM Match : Ribosomal_S12 (HMM E-Value=1.4e-12)
          Length = 302

 Score = 33.9 bits (74), Expect = 0.047
 Identities = 15/27 (55%), Positives = 21/27 (77%)
 Frame = +3

Query: 21  KQPNSAIRKCVRVQLIKNGKKVTAFIP 101
           K+PNSA RKC  ++L  NGK ++A+IP
Sbjct: 242 KKPNSAQRKCALLKL-SNGKTISAYIP 267


>SB_4259| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 540

 Score = 29.9 bits (64), Expect = 0.76
 Identities = 12/46 (26%), Positives = 21/46 (45%)
 Frame = +2

Query: 146 VAGFGRKGHAVGDIPGVRFKVVKVANVSLLALYKEKRSDQDHRCTL 283
           + G+  KG+ +G IPG+  +   +      + Y      +DH C L
Sbjct: 34  IPGYRLKGYVIGSIPGISVEKCIIKCTKHSSCYSINHHQRDHLCEL 79


>SB_9429| Best HMM Match : Pili_assembly_N (HMM E-Value=5.8)
          Length = 125

 Score = 27.1 bits (57), Expect = 5.3
 Identities = 12/32 (37%), Positives = 22/32 (68%), Gaps = 1/32 (3%)
 Frame = +2

Query: 182 DIP-GVRFKVVKVANVSLLALYKEKRSDQDHR 274
           D+P  V+ K V++  V+  + YK+KR+D++ R
Sbjct: 57  DLPLQVQIKSVQIRRVTYFSKYKKKRTDKESR 88


>SB_51974| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 3474

 Score = 26.6 bits (56), Expect = 7.1
 Identities = 13/44 (29%), Positives = 23/44 (52%)
 Frame = -2

Query: 362  TIFIMY*DFTFYELINNALPDSRSLITMYTYDLGRSFSLCRERG 231
            TI+ +Y + T Y +IN    +    +T+   +  RS S+  +RG
Sbjct: 1923 TIYTLYSNRTMYHIINTQHSNMSLRVTVRPLNESRSLSIAVQRG 1966


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,468,141
Number of Sequences: 59808
Number of extensions: 218184
Number of successful extensions: 473
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 447
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 473
length of database: 16,821,457
effective HSP length: 74
effective length of database: 12,395,665
effective search space used: 669365910
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)