Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30697
         (387 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    25   0.40 
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    25   0.40 
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              23   1.2  
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    22   2.8  
DQ011226-1|AAY63895.1|  471|Apis mellifera Rh-like protein protein.    21   6.5  
AF213012-1|AAG43568.1|  492|Apis mellifera acetylcholinesterase ...    20   8.6  
AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase ...    20   8.6  

>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
           AbsCAM-Ig7B protein.
          Length = 1923

 Score = 24.6 bits (51), Expect = 0.40
 Identities = 14/41 (34%), Positives = 23/41 (56%), Gaps = 4/41 (9%)
 Frame = +2

Query: 167 GHAVGDIPGVRFKVVKVANVSLL----ALYKEKRSDQDHRC 277
           GH V D+PGVR +V++   + LL    A +++      +RC
Sbjct: 69  GHPVNDVPGVR-RVLRNGTLVLLPFPAAAFRQDVHSAAYRC 108



 Score = 21.0 bits (42), Expect = 4.9
 Identities = 10/25 (40%), Positives = 13/25 (52%)
 Frame = -1

Query: 207  TLKRTPGMSPTA*PLRPNPATSIRR 133
            T  + PG+ P A  L PN  T + R
Sbjct: 1494 TQGQAPGIPPAATFLSPNSTTLVLR 1518


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
           AbsCAM-Ig7A protein.
          Length = 1919

 Score = 24.6 bits (51), Expect = 0.40
 Identities = 14/41 (34%), Positives = 23/41 (56%), Gaps = 4/41 (9%)
 Frame = +2

Query: 167 GHAVGDIPGVRFKVVKVANVSLL----ALYKEKRSDQDHRC 277
           GH V D+PGVR +V++   + LL    A +++      +RC
Sbjct: 69  GHPVNDVPGVR-RVLRNGTLVLLPFPAAAFRQDVHSAAYRC 108



 Score = 21.0 bits (42), Expect = 4.9
 Identities = 10/25 (40%), Positives = 13/25 (52%)
 Frame = -1

Query: 207  TLKRTPGMSPTA*PLRPNPATSIRR 133
            T  + PG+ P A  L PN  T + R
Sbjct: 1490 TQGQAPGIPPAATFLSPNSTTLVLR 1514


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 23.0 bits (47), Expect = 1.2
 Identities = 8/11 (72%), Positives = 10/11 (90%)
 Frame = +2

Query: 167 GHAVGDIPGVR 199
           G AVGD+PG+R
Sbjct: 42  GSAVGDVPGLR 52


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 21.8 bits (44), Expect = 2.8
 Identities = 7/9 (77%), Positives = 9/9 (100%)
 Frame = +3

Query: 27  PNSAIRKCV 53
           PNSA+RKC+
Sbjct: 584 PNSAVRKCM 592


>DQ011226-1|AAY63895.1|  471|Apis mellifera Rh-like protein protein.
          Length = 471

 Score = 20.6 bits (41), Expect = 6.5
 Identities = 10/38 (26%), Positives = 18/38 (47%)
 Frame = -2

Query: 341 DFTFYELINNALPDSRSLITMYTYDLGRSFSLCRERGE 228
           D++ YE+     P+S + +     + G S  L R  G+
Sbjct: 359 DYSLYEIFPARAPNSETKLAEMRDNYGISAGLNRTAGQ 396


>AF213012-1|AAG43568.1|  492|Apis mellifera acetylcholinesterase
           protein.
          Length = 492

 Score = 20.2 bits (40), Expect = 8.6
 Identities = 8/17 (47%), Positives = 12/17 (70%)
 Frame = -2

Query: 113 ATVTGDECGHFLSVLNE 63
           AT+  D+CG   ++LNE
Sbjct: 298 ATILVDDCGCNSTMLNE 314


>AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase
           protein.
          Length = 628

 Score = 20.2 bits (40), Expect = 8.6
 Identities = 8/17 (47%), Positives = 12/17 (70%)
 Frame = -2

Query: 113 ATVTGDECGHFLSVLNE 63
           AT+  D+CG   ++LNE
Sbjct: 298 ATILVDDCGCNSTMLNE 314


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 101,093
Number of Sequences: 438
Number of extensions: 1874
Number of successful extensions: 9
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used:  9391092
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)