BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= wdV30697 (387 letters) Database: arabidopsis 28,952 sequences; 12,070,560 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value At5g02960.1 68418.m00239 40S ribosomal protein S23 (RPS23B) ribo... 91 2e-19 At3g09680.1 68416.m01147 40S ribosomal protein S23 (RPS23A) simi... 91 2e-19 At1g73370.1 68414.m08492 sucrose synthase, putative / sucrose-UD... 30 0.47 At2g07675.1 68415.m00903 ribosomal protein S12 mitochondrial fam... 29 1.4 At4g33170.1 68417.m04725 pentatricopeptide (PPR) repeat-containi... 27 5.8 At2g41450.1 68415.m05121 GCN5-related N-acetyltransferase (GNAT)... 27 5.8 At1g30160.1 68414.m03687 expressed protein contains Pfam profile... 27 5.8 >At5g02960.1 68418.m00239 40S ribosomal protein S23 (RPS23B) ribosomal protein S23, Fragaria x ananassa, PIR:S56673 Length = 142 Score = 91.1 bits (216), Expect = 2e-19 Identities = 38/46 (82%), Positives = 43/46 (93%) Frame = +3 Query: 3 KVGVEAKQPNSAIRKCVRVQLIKNGKKVTAFIPRDGCLNHIEENDE 140 K+G+EAKQPNSAIRKC RVQLIKNGKK+ AF+P DGCLN+IEENDE Sbjct: 53 KIGIEAKQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDE 98 Score = 71.7 bits (168), Expect = 2e-13 Identities = 32/37 (86%), Positives = 36/37 (97%) Frame = +2 Query: 146 VAGFGRKGHAVGDIPGVRFKVVKVANVSLLALYKEKR 256 +AGFGRKGHAVGDIPGVRFKVVKV+ VSLLAL+KEK+ Sbjct: 101 IAGFGRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKK 137 >At3g09680.1 68416.m01147 40S ribosomal protein S23 (RPS23A) similar to 40S ribosomal protein S23 (S12) GB:P46297 from [Fragaria x ananassa] Length = 142 Score = 91.1 bits (216), Expect = 2e-19 Identities = 38/46 (82%), Positives = 43/46 (93%) Frame = +3 Query: 3 KVGVEAKQPNSAIRKCVRVQLIKNGKKVTAFIPRDGCLNHIEENDE 140 K+G+EAKQPNSAIRKC RVQLIKNGKK+ AF+P DGCLN+IEENDE Sbjct: 53 KIGIEAKQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDE 98 Score = 71.7 bits (168), Expect = 2e-13 Identities = 32/37 (86%), Positives = 36/37 (97%) Frame = +2 Query: 146 VAGFGRKGHAVGDIPGVRFKVVKVANVSLLALYKEKR 256 +AGFGRKGHAVGDIPGVRFKVVKV+ VSLLAL+KEK+ Sbjct: 101 IAGFGRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKK 137 >At1g73370.1 68414.m08492 sucrose synthase, putative / sucrose-UDP glucosyltransferase, putative similar to sucrose synthase GI:6682841 from [Citrus unshiu] Length = 942 Score = 30.3 bits (65), Expect = 0.47 Identities = 17/60 (28%), Positives = 29/60 (48%), Gaps = 1/60 (1%) Frame = -3 Query: 295 GHLSQCTPMILVAPFLFVESEERHVGYFYHLKTNSGNVT-DGVTFTTESRH*YSSFSSMW 119 G++ CT V P + + G++ ++K NSG++T D +T T + S F W Sbjct: 73 GYILTCTQEAAVVPPFVALAARPNPGFWEYVKVNSGDLTVDEITATDYLKLKESVFDESW 132 >At2g07675.1 68415.m00903 ribosomal protein S12 mitochondrial family protein Length = 125 Score = 28.7 bits (61), Expect = 1.4 Identities = 20/54 (37%), Positives = 30/54 (55%) Frame = +3 Query: 21 KQPNSAIRKCVRVQLIKNGKKVTAFIPRDGCLNHIEENDEY*WRDSVVKVTPSV 182 K+PNSA RK +V+L N + A IP +G ++ +E+ R VK +P V Sbjct: 43 KKPNSAPRKIAKVRL-SNRHDIFAHIPGEG--HNSQEHSTVLIRGGRVKDSPGV 93 >At4g33170.1 68417.m04725 pentatricopeptide (PPR) repeat-containing protein contains Pfam profile PF01535: PPR repeat Length = 990 Score = 26.6 bits (56), Expect = 5.8 Identities = 13/48 (27%), Positives = 25/48 (52%) Frame = +3 Query: 222 TCLSSLSTKRKGATKIIGVHCDK*PAVGKRVVYKFIKCKILVHNKYCV 365 +CL++L R+ + ++C P VG +V + KC + + YC+ Sbjct: 629 SCLTALEQGRQIHANALKLNCTNDPFVGTSLVDMYAKCG-SIDDAYCL 675 >At2g41450.1 68415.m05121 GCN5-related N-acetyltransferase (GNAT) family protein low similarity to Swift [Xenopus laevis] GI:14164561; contains Pfam profiles PF00583: acetyltransferase, GNAT family, PF00533: BRCA1 C Terminus (BRCT) domain Length = 991 Score = 26.6 bits (56), Expect = 5.8 Identities = 18/61 (29%), Positives = 29/61 (47%), Gaps = 1/61 (1%) Frame = +3 Query: 30 NSAIRKCVRVQLIKNGKKVTAFIPRDGCLNHIEENDEY*WRDSVVKVTP-SVTFPEFVLR 206 NSAI K + ++L+K K F+ D C N Y + ++ P S+ F+L+ Sbjct: 546 NSAILKKLTIRLVKRSWKAECFL-EDLCCIQRGSNSSYSRKFLLITFLPLSLACLAFLLQ 604 Query: 207 W 209 W Sbjct: 605 W 605 >At1g30160.1 68414.m03687 expressed protein contains Pfam profile PF03478: Protein of unknown function (DUF295) Length = 311 Score = 26.6 bits (56), Expect = 5.8 Identities = 10/16 (62%), Positives = 11/16 (68%) Frame = -2 Query: 266 LGRSFSLCRERGETRW 219 LGR SLCR R + RW Sbjct: 97 LGRQLSLCRPRHDLRW 112 Database: arabidopsis Posted date: Oct 4, 2007 10:56 AM Number of letters in database: 12,070,560 Number of sequences in database: 28,952 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 7,828,063 Number of Sequences: 28952 Number of extensions: 143936 Number of successful extensions: 330 Number of sequences better than 10.0: 7 Number of HSP's better than 10.0 without gapping: 322 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 330 length of database: 12,070,560 effective HSP length: 73 effective length of database: 9,957,064 effective search space used: 547638520 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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