Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30697
         (387 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g02960.1 68418.m00239 40S ribosomal protein S23 (RPS23B) ribo...    91   2e-19
At3g09680.1 68416.m01147 40S ribosomal protein S23 (RPS23A) simi...    91   2e-19
At1g73370.1 68414.m08492 sucrose synthase, putative / sucrose-UD...    30   0.47 
At2g07675.1 68415.m00903 ribosomal protein S12 mitochondrial fam...    29   1.4  
At4g33170.1 68417.m04725 pentatricopeptide (PPR) repeat-containi...    27   5.8  
At2g41450.1 68415.m05121 GCN5-related N-acetyltransferase (GNAT)...    27   5.8  
At1g30160.1 68414.m03687 expressed protein contains Pfam profile...    27   5.8  

>At5g02960.1 68418.m00239 40S ribosomal protein S23 (RPS23B)
           ribosomal protein S23, Fragaria x ananassa, PIR:S56673
          Length = 142

 Score = 91.1 bits (216), Expect = 2e-19
 Identities = 38/46 (82%), Positives = 43/46 (93%)
 Frame = +3

Query: 3   KVGVEAKQPNSAIRKCVRVQLIKNGKKVTAFIPRDGCLNHIEENDE 140
           K+G+EAKQPNSAIRKC RVQLIKNGKK+ AF+P DGCLN+IEENDE
Sbjct: 53  KIGIEAKQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDE 98



 Score = 71.7 bits (168), Expect = 2e-13
 Identities = 32/37 (86%), Positives = 36/37 (97%)
 Frame = +2

Query: 146 VAGFGRKGHAVGDIPGVRFKVVKVANVSLLALYKEKR 256
           +AGFGRKGHAVGDIPGVRFKVVKV+ VSLLAL+KEK+
Sbjct: 101 IAGFGRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKK 137


>At3g09680.1 68416.m01147 40S ribosomal protein S23 (RPS23A) similar
           to 40S ribosomal protein S23 (S12) GB:P46297 from
           [Fragaria x ananassa]
          Length = 142

 Score = 91.1 bits (216), Expect = 2e-19
 Identities = 38/46 (82%), Positives = 43/46 (93%)
 Frame = +3

Query: 3   KVGVEAKQPNSAIRKCVRVQLIKNGKKVTAFIPRDGCLNHIEENDE 140
           K+G+EAKQPNSAIRKC RVQLIKNGKK+ AF+P DGCLN+IEENDE
Sbjct: 53  KIGIEAKQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDE 98



 Score = 71.7 bits (168), Expect = 2e-13
 Identities = 32/37 (86%), Positives = 36/37 (97%)
 Frame = +2

Query: 146 VAGFGRKGHAVGDIPGVRFKVVKVANVSLLALYKEKR 256
           +AGFGRKGHAVGDIPGVRFKVVKV+ VSLLAL+KEK+
Sbjct: 101 IAGFGRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKK 137


>At1g73370.1 68414.m08492 sucrose synthase, putative / sucrose-UDP
           glucosyltransferase, putative similar to sucrose
           synthase GI:6682841 from [Citrus unshiu]
          Length = 942

 Score = 30.3 bits (65), Expect = 0.47
 Identities = 17/60 (28%), Positives = 29/60 (48%), Gaps = 1/60 (1%)
 Frame = -3

Query: 295 GHLSQCTPMILVAPFLFVESEERHVGYFYHLKTNSGNVT-DGVTFTTESRH*YSSFSSMW 119
           G++  CT    V P     +   + G++ ++K NSG++T D +T T   +   S F   W
Sbjct: 73  GYILTCTQEAAVVPPFVALAARPNPGFWEYVKVNSGDLTVDEITATDYLKLKESVFDESW 132


>At2g07675.1 68415.m00903 ribosomal protein S12 mitochondrial family
           protein
          Length = 125

 Score = 28.7 bits (61), Expect = 1.4
 Identities = 20/54 (37%), Positives = 30/54 (55%)
 Frame = +3

Query: 21  KQPNSAIRKCVRVQLIKNGKKVTAFIPRDGCLNHIEENDEY*WRDSVVKVTPSV 182
           K+PNSA RK  +V+L  N   + A IP +G  ++ +E+     R   VK +P V
Sbjct: 43  KKPNSAPRKIAKVRL-SNRHDIFAHIPGEG--HNSQEHSTVLIRGGRVKDSPGV 93


>At4g33170.1 68417.m04725 pentatricopeptide (PPR) repeat-containing
           protein contains Pfam profile PF01535: PPR repeat
          Length = 990

 Score = 26.6 bits (56), Expect = 5.8
 Identities = 13/48 (27%), Positives = 25/48 (52%)
 Frame = +3

Query: 222 TCLSSLSTKRKGATKIIGVHCDK*PAVGKRVVYKFIKCKILVHNKYCV 365
           +CL++L   R+     + ++C   P VG  +V  + KC   + + YC+
Sbjct: 629 SCLTALEQGRQIHANALKLNCTNDPFVGTSLVDMYAKCG-SIDDAYCL 675


>At2g41450.1 68415.m05121 GCN5-related N-acetyltransferase (GNAT)
           family protein low similarity to Swift [Xenopus laevis]
           GI:14164561; contains Pfam profiles PF00583:
           acetyltransferase, GNAT family, PF00533: BRCA1 C
           Terminus (BRCT) domain
          Length = 991

 Score = 26.6 bits (56), Expect = 5.8
 Identities = 18/61 (29%), Positives = 29/61 (47%), Gaps = 1/61 (1%)
 Frame = +3

Query: 30  NSAIRKCVRVQLIKNGKKVTAFIPRDGCLNHIEENDEY*WRDSVVKVTP-SVTFPEFVLR 206
           NSAI K + ++L+K   K   F+  D C      N  Y  +  ++   P S+    F+L+
Sbjct: 546 NSAILKKLTIRLVKRSWKAECFL-EDLCCIQRGSNSSYSRKFLLITFLPLSLACLAFLLQ 604

Query: 207 W 209
           W
Sbjct: 605 W 605


>At1g30160.1 68414.m03687 expressed protein contains Pfam profile
           PF03478: Protein of unknown function (DUF295)
          Length = 311

 Score = 26.6 bits (56), Expect = 5.8
 Identities = 10/16 (62%), Positives = 11/16 (68%)
 Frame = -2

Query: 266 LGRSFSLCRERGETRW 219
           LGR  SLCR R + RW
Sbjct: 97  LGRQLSLCRPRHDLRW 112


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,828,063
Number of Sequences: 28952
Number of extensions: 143936
Number of successful extensions: 330
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 322
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 330
length of database: 12,070,560
effective HSP length: 73
effective length of database: 9,957,064
effective search space used: 547638520
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)