Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30695
         (662 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC24C6.09c |||phosphoketolase |Schizosaccharomyces pombe|chr 2...    28   1.4  
SPAC16C9.04c |||CCR4-Not complex subunit Mot2 |Schizosaccharomyc...    27   1.8  
SPAC30D11.09 |cwf19||complexed with Cdc5 protein Cwf19 |Schizosa...    26   4.2  
SPAC3F10.06c |||initiator methionine tRNA 2'-O-ribosyl phosphate...    25   7.4  
SPAC19A8.04 |erg5||C-22 sterol desaturase Erg5 |Schizosaccharomy...    25   9.7  
SPBC32H8.02c |nep2|mug120|nedd8 protease Nep2|Schizosaccharomyce...    25   9.7  
SPBC20F10.07 |||GRAM domain protein|Schizosaccharomyces pombe|ch...    25   9.7  

>SPBC24C6.09c |||phosphoketolase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 825

 Score = 27.9 bits (59), Expect = 1.4
 Identities = 12/38 (31%), Positives = 17/38 (44%)
 Frame = +2

Query: 470 QHGPSRRTTRKHCPQRTARHGTEHVMTNGCIALKAPSF 583
           +HG   +   +H P R  R G  H   N  + LK P +
Sbjct: 381 EHGLPTKGITEHLPPREKRMGQRHETYNSYLPLKVPDW 418


>SPAC16C9.04c |||CCR4-Not complex subunit Mot2 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 489

 Score = 27.5 bits (58), Expect = 1.8
 Identities = 14/42 (33%), Positives = 23/42 (54%)
 Frame = -2

Query: 466 SACWAGASMGSLRM*LKVALNGRPVLIHKNMSVPRLLPDVQK 341
           +A WA  S   L+  L+ A+N +P+   K+ S    +P +QK
Sbjct: 349 TAAWAKLSPSVLQERLRAAVNQQPLDALKSSSTQTSIPKIQK 390


>SPAC30D11.09 |cwf19||complexed with Cdc5 protein Cwf19
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 639

 Score = 26.2 bits (55), Expect = 4.2
 Identities = 17/40 (42%), Positives = 21/40 (52%), Gaps = 2/40 (5%)
 Frame = -1

Query: 449 SIDGQSPHVVKSRIKWQTGAHPQ--KHVCAEVITRCPEVI 336
           SIDG   HVV+    W  G H Q  + V A ++   PEVI
Sbjct: 570 SIDGGYGHVVEDEKAW--GRHDQVPRQVFASMLNLPPEVI 607


>SPAC3F10.06c |||initiator methionine tRNA 2'-O-ribosyl phosphate
           transferase |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 453

 Score = 25.4 bits (53), Expect = 7.4
 Identities = 11/21 (52%), Positives = 14/21 (66%)
 Frame = -1

Query: 494 WYV*RVHAVISMLGRSIDGQS 432
           WYV R HA IS+  +S DG +
Sbjct: 55  WYVNRRHAPISVYFKSTDGHT 75


>SPAC19A8.04 |erg5||C-22 sterol desaturase Erg5 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 541

 Score = 25.0 bits (52), Expect = 9.7
 Identities = 10/25 (40%), Positives = 12/25 (48%)
 Frame = -1

Query: 467 ISMLGRSIDGQSPHVVKSRIKWQTG 393
           I  +G  +D   P   K   KWQTG
Sbjct: 59  IPFMGSFLDSMKPTFEKYNAKWQTG 83


>SPBC32H8.02c |nep2|mug120|nedd8 protease Nep2|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 415

 Score = 25.0 bits (52), Expect = 9.7
 Identities = 10/34 (29%), Positives = 18/34 (52%)
 Frame = +2

Query: 215 SSTISCPISTADHWSSTGIVRDEGEGRFDNDLSN 316
           + T  C I +  HWS   +  ++G G + + +SN
Sbjct: 159 NDTNECGIESGSHWSLLVVSVEKGLGWYYDSMSN 192


>SPBC20F10.07 |||GRAM domain protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 764

 Score = 25.0 bits (52), Expect = 9.7
 Identities = 15/57 (26%), Positives = 27/57 (47%)
 Frame = -3

Query: 393 CSSTKTCLCRGYYPMSRSHICCNLHLLDKSLSNLPSPSSRTMPVEDQ*SAVLIGQEI 223
           C+  +     G   +S SHIC N  +    ++N+  P +  + VE + +AV+    I
Sbjct: 218 CALQRDIFLHGRMYLSESHICFNSSIFG-WVTNIVIPVTEIVSVEKKSTAVVFPNAI 273


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,754,526
Number of Sequences: 5004
Number of extensions: 57653
Number of successful extensions: 138
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 129
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 138
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 301829700
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)