BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= wdV30695 (662 letters) Database: rice 37,544 sequences; 14,793,348 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value 09_06_0187 + 21433842-21433887,21434504-21435246,21435437-214354... 30 1.9 09_04_0739 - 19833462-19834456,19835272-19835333,19835846-198359... 29 3.3 06_03_0946 - 26208253-26209075,26209181-26209329,26209525-26209812 28 5.8 >09_06_0187 + 21433842-21433887,21434504-21435246,21435437-21435484, 21435929-21436814,21436967-21437056,21437543-21438417 Length = 895 Score = 29.9 bits (64), Expect = 1.9 Identities = 11/22 (50%), Positives = 16/22 (72%) Frame = +1 Query: 184 FISRMNPYSPELNYFLSYQYCR 249 FI R+ +SP++ YF SY+Y R Sbjct: 190 FIGRLPEWSPDVRYFTSYEYPR 211 >09_04_0739 - 19833462-19834456,19835272-19835333,19835846-19835937, 19836271-19836540,19836795-19836913,19836947-19837778 Length = 789 Score = 29.1 bits (62), Expect = 3.3 Identities = 15/33 (45%), Positives = 17/33 (51%) Frame = +3 Query: 429 RRLPIDAPAQHADDSMDPLDVPQGSTAHNAPPD 527 R+ P+D QH DDS L P T NAP D Sbjct: 321 RKPPVDEKVQHKDDS--KLQNPAKKTTANAPSD 351 >06_03_0946 - 26208253-26209075,26209181-26209329,26209525-26209812 Length = 419 Score = 28.3 bits (60), Expect = 5.8 Identities = 21/68 (30%), Positives = 32/68 (47%), Gaps = 6/68 (8%) Frame = -2 Query: 643 ATRLLAYEVLDLAAVLRLPVEA-RSFERDAAISH-----DVFRPMSGGALWAVLPCGTSR 482 +TR L+ V A+LR + A R+ +R A H D+FRP L+ + G Sbjct: 276 STRSLSLRVSGAPALLRASLAALRALDRGAPWLHLPSIPDIFRPFGAYLLYGLRMSGPDG 335 Query: 481 GSMLSSAC 458 ++L S C Sbjct: 336 PALLRSLC 343 Database: rice Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 14,793,348 Number of sequences in database: 37,544 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 19,014,229 Number of Sequences: 37544 Number of extensions: 427057 Number of successful extensions: 1032 Number of sequences better than 10.0: 3 Number of HSP's better than 10.0 without gapping: 1015 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1032 length of database: 14,793,348 effective HSP length: 79 effective length of database: 11,827,372 effective search space used: 1667659452 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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