Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30695
         (662 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_1652| Best HMM Match : Keratin_B2 (HMM E-Value=0.031)               28   5.9  
SB_43699| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.8  

>SB_1652| Best HMM Match : Keratin_B2 (HMM E-Value=0.031)
          Length = 563

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 21/65 (32%), Positives = 28/65 (43%), Gaps = 2/65 (3%)
 Frame = -3

Query: 552 LVMTCSVPCRAVRCG--QCFLVVRLEGPCCHQHAGQEHRWAVSACS*KSH*MADRCSSTK 379
           +V+ C+V CRAV C    C +V      CC          AVS C+     +  R  S +
Sbjct: 333 VVLCCAVLCRAVSCRVVLCCVVPCCVVLCCAVSCRAVLCRAVSCCAVLCRAVLCRAVSCR 392

Query: 378 TCLCR 364
             LCR
Sbjct: 393 AVLCR 397


>SB_43699| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 651

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 19/69 (27%), Positives = 29/69 (42%), Gaps = 2/69 (2%)
 Frame = -1

Query: 521 RCVVGSASLWYV*RVHAVISMLGRSIDGQSPHVVKSRIKWQTGAHPQKH--VCAEVITRC 348
           R +V  A+LW    + AV  ++G S  G  P  V   I W T  H      +C  V+   
Sbjct: 141 RMLVIIATLWGFAILWAVFPLIGWSSYGPEPGYVSCSITWYTTDHNNVSYIICVSVLFFL 200

Query: 347 PEVIFVVTC 321
             ++ +  C
Sbjct: 201 IPIVTMTFC 209


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,903,143
Number of Sequences: 59808
Number of extensions: 501062
Number of successful extensions: 1385
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1198
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1379
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1705624125
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)