Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30695
         (662 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g00340.1 68417.m00045 S-locus glycoprotein family protein / c...    27   8.4  
At3g18060.1 68416.m02297 transducin family protein / WD-40 repea...    27   8.4  

>At4g00340.1 68417.m00045 S-locus glycoprotein family protein /
           curculin-like (mannose-binding) lectin family protein /
           PAN domain-containing protein contains Pfam profiles:
           PF01453 lectin (probable mannose binding), PF00954
           S-locus glycoprotein family, PF00024 PAN domain
          Length = 402

 Score = 27.5 bits (58), Expect = 8.4
 Identities = 17/46 (36%), Positives = 26/46 (56%), Gaps = 4/46 (8%)
 Frame = -3

Query: 396 RCSSTKTCL----CRGYYPMSRSHICCNLHLLDKSLSNLPSPSSRT 271
           + S  KTCL    C G+Y   +S++C    +L +S +NL + SS T
Sbjct: 356 KSSCAKTCLGNSSCVGFYHKEKSNLC---KILLESPNNLKNSSSET 398


>At3g18060.1 68416.m02297 transducin family protein / WD-40 repeat
           family protein similar to 66 kDa stress protein
           (SP:P90587) [Physarum polycephalum (Slime mold)];
           similar to WDR1 protein GB:AAD05042 [Gallus gallus]
           (Genomics 56 (1), 59-69 (1999)); contains 11 WD-40
           repeats (PF00400)
          Length = 609

 Score = 27.5 bits (58), Expect = 8.4
 Identities = 18/53 (33%), Positives = 25/53 (47%), Gaps = 4/53 (7%)
 Frame = -3

Query: 621 KSLISPQC*GSQWKLGALSAMQPLVMTCSV----PCRAVRCGQCFLVVRLEGP 475
           KSL+      S   +G        V++C++    P R V CG+ FLV   EGP
Sbjct: 123 KSLVRAFMWDSGSNVGEFDGHSRRVLSCAIKPTRPFRIVTCGEDFLVNFYEGP 175


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,686,072
Number of Sequences: 28952
Number of extensions: 317211
Number of successful extensions: 779
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 755
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 779
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1393347168
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)