Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30693
         (633 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z75714-1|CAB00058.1|  194|Caenorhabditis elegans Hypothetical pr...   114   4e-26
U23179-7|AAC46721.1|  782|Caenorhabditis elegans Hypothetical pr...    29   3.7  

>Z75714-1|CAB00058.1|  194|Caenorhabditis elegans Hypothetical
           protein ZC434.2 protein.
          Length = 194

 Score =  114 bits (275), Expect = 4e-26
 Identities = 53/109 (48%), Positives = 78/109 (71%), Gaps = 2/109 (1%)
 Frame = +3

Query: 246 KEVSGKHVVFVGDRKILPKPSHKTRVA-NKQKRPRSRTLTSVYDAILEDLVFPAEIVGKR 422
           K+  G+ ++ +  R+ILPKP   ++    KQKRPRSRTLT+V+DA L++LV+PAE+VG+R
Sbjct: 84  KKFGGRDILILAKRRILPKPQRGSKARPQKQKRPRSRTLTAVHDAWLDELVYPAEVVGRR 143

Query: 423 IRVKLDGSQLIKVHLDKNQQTTIEHKVDT-SSLYQEANGTRSDLRVPEP 566
           IRVKLDG ++ KVHLDK+ QT + HK+   +S+Y++  G       P+P
Sbjct: 144 IRVKLDGKKVYKVHLDKSHQTNVGHKIGVFASVYRKLTGKDVTFEFPDP 192



 Score = 99.1 bits (236), Expect = 2e-21
 Identities = 46/79 (58%), Positives = 60/79 (75%)
 Frame = +1

Query: 16  KIIKATGAEADSFETSISQALVELETNSDLKAQLRELYITKAKEIELHNKKSIIIYVPMP 195
           K++K+ G      E  +SQAL++LETN D+++QL+ELYI   KE+EL NK +IIIYVP+P
Sbjct: 7   KLLKSDGKVVSEIEKQVSQALIDLETNDDVQSQLKELYIVGVKEVELGNKSAIIIYVPVP 66

Query: 196 KLKAFQKIQIRLVRELEKK 252
           +LKAF KI   LVRELEKK
Sbjct: 67  QLKAFHKIHPALVRELEKK 85



 Score = 28.7 bits (61), Expect = 3.7
 Identities = 11/16 (68%), Positives = 15/16 (93%)
 Frame = +1

Query: 523 KKLTGREVTFEFPNLI 570
           +KLTG++VTFEFP+ I
Sbjct: 178 RKLTGKDVTFEFPDPI 193


>U23179-7|AAC46721.1|  782|Caenorhabditis elegans Hypothetical
           protein C27D6.1 protein.
          Length = 782

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 19/61 (31%), Positives = 33/61 (54%), Gaps = 3/61 (4%)
 Frame = +1

Query: 1   VKMSTKIIKATGAEADSFE---TSISQALVELETNSDLKAQLRELYITKAKEIELHNKKS 171
           +K + K  K   AEA+ ++   T  S+ L ELE       Q +E +  K++E+E+ NK+ 
Sbjct: 242 LKANEKARKEIEAEAEKWKDRATRNSKRLPELELELAETVQAKEEWQVKSQEMEIQNKQL 301

Query: 172 I 174
           +
Sbjct: 302 V 302


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,574,977
Number of Sequences: 27780
Number of extensions: 244839
Number of successful extensions: 661
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 647
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 660
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1395683256
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)