Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV30693
(633 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g16130.1 68418.m01884 40S ribosomal protein S7 (RPS7C) 40S ri... 93 1e-19
At1g48830.2 68414.m05465 40S ribosomal protein S7 (RPS7A) simila... 92 3e-19
At1g48830.1 68414.m05464 40S ribosomal protein S7 (RPS7A) simila... 92 3e-19
At3g02560.2 68416.m00247 40S ribosomal protein S7 (RPS7B) simila... 90 1e-18
At3g02560.1 68416.m00246 40S ribosomal protein S7 (RPS7B) simila... 90 1e-18
At3g19590.1 68416.m02484 WD-40 repeat family protein / mitotic c... 30 1.1
At1g49910.1 68414.m05597 WD-40 repeat family protein / mitotic c... 30 1.1
At1g11130.1 68414.m01274 leucine-rich repeat family protein / pr... 29 2.6
At1g04600.1 68414.m00454 myosin, putative similar to myosin (GI:... 28 5.9
>At5g16130.1 68418.m01884 40S ribosomal protein S7 (RPS7C) 40S
ribosomal protein S7 homolog - Brassica oleracea,
EMBL:AF144752
Length = 190
Score = 93.1 bits (221), Expect = 1e-19
Identities = 47/98 (47%), Positives = 69/98 (70%), Gaps = 1/98 (1%)
Frame = +3
Query: 246 KEVSGKHVVFVGDRKILPKPSHKTRVANKQKRPRSRTLTSVYDAILEDLVFPAEIVGKRI 425
K+ SGK V+FV R+I+ P V +RPR+RTLTSV++A+LED+ FPAEIVGKR
Sbjct: 86 KKFSGKDVIFVTTRRIMRPPKKGAAV----QRPRNRTLTSVHEAMLEDVAFPAEIVGKRT 141
Query: 426 RVKLDGSQLIKVHLDKNQQTTIEHKVDTS-SLYQEANG 536
R +LDGS+++KV LD ++ E+K++T +Y++ G
Sbjct: 142 RYRLDGSKIMKVFLDAKEKNNTEYKLETMVGVYRKLTG 179
Score = 75.4 bits (177), Expect = 3e-14
Identities = 40/81 (49%), Positives = 57/81 (70%), Gaps = 2/81 (2%)
Frame = +1
Query: 16 KIIKATGAEADSFETSISQALVELE-TNSDLKAQLRELYITKAKEIELH-NKKSIIIYVP 189
KI K AE E ++QAL +LE TN +LK++L++LYI +A +++ N+K+++IYVP
Sbjct: 7 KIKKDKNAEPTECEEQVAQALFDLENTNQELKSELKDLYINQAVHMDISGNRKAVVIYVP 66
Query: 190 MPKLKAFQKIQIRLVRELEKK 252
KAF+KI RLVRELEKK
Sbjct: 67 FRLRKAFRKIHPRLVRELEKK 87
>At1g48830.2 68414.m05465 40S ribosomal protein S7 (RPS7A) similar
to 40S ribosomal protein S7 homolog GI:5532505 from
[Brassica oleracea]
Length = 191
Score = 91.9 bits (218), Expect = 3e-19
Identities = 47/98 (47%), Positives = 71/98 (72%), Gaps = 1/98 (1%)
Frame = +3
Query: 246 KEVSGKHVVFVGDRKILPKPSHKTRVANKQKRPRSRTLTSVYDAILEDLVFPAEIVGKRI 425
K+ SGK V+ + R+I+ +P K A KRPR+RTLTSV++AIL+D+V PAEIVGKR
Sbjct: 86 KKFSGKDVILIATRRIV-RPPKKGSAA---KRPRNRTLTSVHEAILDDVVLPAEIVGKRT 141
Query: 426 RVKLDGSQLIKVHLDKNQQTTIEHKVDT-SSLYQEANG 536
R +LDG++++KV LD ++ E+KV+ S++Y++ G
Sbjct: 142 RYRLDGTKIMKVFLDPKERNNTEYKVEAFSAVYKKLTG 179
Score = 70.5 bits (165), Expect = 8e-13
Identities = 34/81 (41%), Positives = 55/81 (67%), Gaps = 2/81 (2%)
Frame = +1
Query: 16 KIIKATGAEADSFETSISQALVELE-TNSDLKAQLRELYITKAKEIELHN-KKSIIIYVP 189
KI K G E + ++QA +LE TN +LK++L++LY+ A ++++ +K+I++ VP
Sbjct: 7 KIHKEKGVELSELDEQVAQAFFDLENTNQELKSELKDLYVNSAVQVDISGGRKAIVVNVP 66
Query: 190 MPKLKAFQKIQIRLVRELEKK 252
KA++KI +RLVRELEKK
Sbjct: 67 YRLRKAYRKIHVRLVRELEKK 87
>At1g48830.1 68414.m05464 40S ribosomal protein S7 (RPS7A) similar
to 40S ribosomal protein S7 homolog GI:5532505 from
[Brassica oleracea]
Length = 191
Score = 91.9 bits (218), Expect = 3e-19
Identities = 47/98 (47%), Positives = 71/98 (72%), Gaps = 1/98 (1%)
Frame = +3
Query: 246 KEVSGKHVVFVGDRKILPKPSHKTRVANKQKRPRSRTLTSVYDAILEDLVFPAEIVGKRI 425
K+ SGK V+ + R+I+ +P K A KRPR+RTLTSV++AIL+D+V PAEIVGKR
Sbjct: 86 KKFSGKDVILIATRRIV-RPPKKGSAA---KRPRNRTLTSVHEAILDDVVLPAEIVGKRT 141
Query: 426 RVKLDGSQLIKVHLDKNQQTTIEHKVDT-SSLYQEANG 536
R +LDG++++KV LD ++ E+KV+ S++Y++ G
Sbjct: 142 RYRLDGTKIMKVFLDPKERNNTEYKVEAFSAVYKKLTG 179
Score = 70.5 bits (165), Expect = 8e-13
Identities = 34/81 (41%), Positives = 55/81 (67%), Gaps = 2/81 (2%)
Frame = +1
Query: 16 KIIKATGAEADSFETSISQALVELE-TNSDLKAQLRELYITKAKEIELHN-KKSIIIYVP 189
KI K G E + ++QA +LE TN +LK++L++LY+ A ++++ +K+I++ VP
Sbjct: 7 KIHKEKGVELSELDEQVAQAFFDLENTNQELKSELKDLYVNSAVQVDISGGRKAIVVNVP 66
Query: 190 MPKLKAFQKIQIRLVRELEKK 252
KA++KI +RLVRELEKK
Sbjct: 67 YRLRKAYRKIHVRLVRELEKK 87
>At3g02560.2 68416.m00247 40S ribosomal protein S7 (RPS7B) similar
to ribosomal protein S7 GB:AAD26256 from [Secale
cereale]
Length = 191
Score = 90.2 bits (214), Expect = 1e-18
Identities = 45/98 (45%), Positives = 69/98 (70%), Gaps = 1/98 (1%)
Frame = +3
Query: 246 KEVSGKHVVFVGDRKILPKPSHKTRVANKQKRPRSRTLTSVYDAILEDLVFPAEIVGKRI 425
K+ SGK V+FV R+I+ P + V +RPR+RTLTSV++A+LED+ +PAEIVGKR
Sbjct: 86 KKFSGKDVIFVATRRIMRPPKKGSAV----QRPRNRTLTSVHEAMLEDVAYPAEIVGKRT 141
Query: 426 RVKLDGSQLIKVHLDKNQQTTIEHKVDTS-SLYQEANG 536
R +LDG++++KV LD + E+K++T +Y++ G
Sbjct: 142 RYRLDGTKIMKVFLDSKLKNDTEYKLETMVGVYRKLTG 179
Score = 79.8 bits (188), Expect = 1e-15
Identities = 40/81 (49%), Positives = 59/81 (72%), Gaps = 2/81 (2%)
Frame = +1
Query: 16 KIIKATGAEADSFETSISQALVELE-TNSDLKAQLRELYITKAKEIELH-NKKSIIIYVP 189
KI K G FE ++QAL +LE TN +LK++L++LYI +A ++++ N+K+++IYVP
Sbjct: 7 KIHKDKGVAPTEFEEQVTQALFDLENTNQELKSELKDLYINQAVQMDISGNRKAVVIYVP 66
Query: 190 MPKLKAFQKIQIRLVRELEKK 252
KAF+KI +RLVRELEKK
Sbjct: 67 FRLRKAFRKIHLRLVRELEKK 87
>At3g02560.1 68416.m00246 40S ribosomal protein S7 (RPS7B) similar
to ribosomal protein S7 GB:AAD26256 from [Secale
cereale]
Length = 191
Score = 90.2 bits (214), Expect = 1e-18
Identities = 45/98 (45%), Positives = 69/98 (70%), Gaps = 1/98 (1%)
Frame = +3
Query: 246 KEVSGKHVVFVGDRKILPKPSHKTRVANKQKRPRSRTLTSVYDAILEDLVFPAEIVGKRI 425
K+ SGK V+FV R+I+ P + V +RPR+RTLTSV++A+LED+ +PAEIVGKR
Sbjct: 86 KKFSGKDVIFVATRRIMRPPKKGSAV----QRPRNRTLTSVHEAMLEDVAYPAEIVGKRT 141
Query: 426 RVKLDGSQLIKVHLDKNQQTTIEHKVDTS-SLYQEANG 536
R +LDG++++KV LD + E+K++T +Y++ G
Sbjct: 142 RYRLDGTKIMKVFLDSKLKNDTEYKLETMVGVYRKLTG 179
Score = 79.8 bits (188), Expect = 1e-15
Identities = 40/81 (49%), Positives = 59/81 (72%), Gaps = 2/81 (2%)
Frame = +1
Query: 16 KIIKATGAEADSFETSISQALVELE-TNSDLKAQLRELYITKAKEIELH-NKKSIIIYVP 189
KI K G FE ++QAL +LE TN +LK++L++LYI +A ++++ N+K+++IYVP
Sbjct: 7 KIHKDKGVAPTEFEEQVTQALFDLENTNQELKSELKDLYINQAVQMDISGNRKAVVIYVP 66
Query: 190 MPKLKAFQKIQIRLVRELEKK 252
KAF+KI +RLVRELEKK
Sbjct: 67 FRLRKAFRKIHLRLVRELEKK 87
>At3g19590.1 68416.m02484 WD-40 repeat family protein / mitotic
checkpoint protein, putative contains 5 WD-40 repeats
(PF00400) (1 weak); similar to testis mitotic checkpoint
protein BUB3 (GB:AAC28439,SP|O43684)[Homo sapiens]
Length = 340
Score = 30.3 bits (65), Expect = 1.1
Identities = 12/22 (54%), Positives = 15/22 (68%)
Frame = +2
Query: 329 QTKEATLKDIDLCVRCYPRGLG 394
Q +E++LK CVRCYP G G
Sbjct: 179 QRRESSLKYQTRCVRCYPNGTG 200
>At1g49910.1 68414.m05597 WD-40 repeat family protein / mitotic
checkpoint protein, putative contains 5 WD-40 repeats
(PF00400) (1 weak); similar to testis mitotic checkpoint
protein BUB3 (GB:AAC28439,SP:O43684)[Homo sapiens]
Length = 339
Score = 30.3 bits (65), Expect = 1.1
Identities = 12/22 (54%), Positives = 15/22 (68%)
Frame = +2
Query: 329 QTKEATLKDIDLCVRCYPRGLG 394
Q +E++LK CVRCYP G G
Sbjct: 178 QRRESSLKYQTRCVRCYPNGTG 199
>At1g11130.1 68414.m01274 leucine-rich repeat family protein /
protein kinase family protein contains leucine
rich-repeat (LRR) domains Pfam:PF00560,
INTERPRO:IPR001611; contains similarity to leucine-rich
repeat transmembrane protein kinase 2 [Zea mays]
gi|3360291|gb|AAC27895
Length = 768
Score = 29.1 bits (62), Expect = 2.6
Identities = 10/34 (29%), Positives = 21/34 (61%)
Frame = -3
Query: 448 CEPSNLTLMRLPTISAGKTKSSRIASYTEVNVLE 347
C+ SN+T +R+P + G S +A ++ + V++
Sbjct: 66 CDSSNITEIRIPGMKVGGGLSDTLADFSSIQVMD 99
>At1g04600.1 68414.m00454 myosin, putative similar to myosin
(GI:499047) [Arabidopsis thaliana]
Length = 1730
Score = 27.9 bits (59), Expect = 5.9
Identities = 25/94 (26%), Positives = 52/94 (55%), Gaps = 1/94 (1%)
Frame = +1
Query: 55 ETSISQALVELETN-SDLKAQLRELYITKAKEIELHNKKSIIIYVPMPKLKAFQKIQIRL 231
E + SQ + L++ +D+K QLR+ TK+KEI + +S++ + K+Q+R
Sbjct: 915 EEAKSQEIEALQSVLTDIKLQLRDTQETKSKEIS--DLQSVLTDI---------KLQLRD 963
Query: 232 VRELEKKLVVNM*SLLETVRSCLSPATKLVLLTN 333
+E + K + ++ S L+ ++ + +K + +TN
Sbjct: 964 TQETKSKEISDLQSALQDMQLEIEELSKGLEMTN 997
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,946,102
Number of Sequences: 28952
Number of extensions: 232444
Number of successful extensions: 666
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 643
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 662
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1295224128
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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