Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV30692
(666 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC22F3.06c |lon1||Lon protease homolog Lon1|Schizosaccharomyce... 29 0.60
SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual 29 0.60
SPCC1235.13 |ght6|meu12|hexose transporter Ght6 |Schizosaccharom... 26 4.2
SPBC1198.07c |||mannan endo-1,6-alpha-mannosidase |Schizosacchar... 26 4.2
SPAC4F10.02 |||aminopeptidase |Schizosaccharomyces pombe|chr 1||... 26 5.6
SPBC651.08c |rpc1||DNA-directed RNA polymerase III complex large... 26 5.6
SPBC19C7.02 |ubr1|SPBC32F12.14|N-end-recognizing protein Ubr1|Sc... 25 7.4
SPCC16A11.04 |snx12||sorting nexin Snx12 |Schizosaccharomyces po... 25 9.8
SPAC22A12.15c |bip1|bip|BiP |Schizosaccharomyces pombe|chr 1|||M... 25 9.8
SPCC4B3.04c |nte1||lysophospholipase|Schizosaccharomyces pombe|c... 25 9.8
SPCC11E10.05c |ynd1||nucleoside diphosphatase |Schizosaccharomyc... 25 9.8
>SPAC22F3.06c |lon1||Lon protease homolog Lon1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1067
Score = 29.1 bits (62), Expect = 0.60
Identities = 28/91 (30%), Positives = 43/91 (47%), Gaps = 8/91 (8%)
Frame = -2
Query: 542 VTSEISKLDKCKLILSPLLNKALGNISLPQMHPSTV-----LMDYVPMVTELLNRKIHDV 378
VTSEI + K +SPL + + N S+ Q + L D+ V+ +R++ +V
Sbjct: 345 VTSEIMNVFKDIANVSPLFREQIANFSISQTSGNVFDEPAKLADFAAAVSAADHRELQEV 404
Query: 377 LVNEKL-KRDLLAFLVVKYE--GAILEHDIN 294
L + R A V+K E A L+H IN
Sbjct: 405 LEATNIGDRLQKALYVLKKELLNAQLQHKIN 435
>SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual
Length = 1236
Score = 29.1 bits (62), Expect = 0.60
Identities = 19/57 (33%), Positives = 33/57 (57%), Gaps = 1/57 (1%)
Frame = +1
Query: 265 SLISNRKAALFISCSNMAPSYLTTKNANKSLFNFSLT-STSCIFLFSSSVTIGT*SI 432
S+ S+ ++ F S S +PS +++ ++ S S T STS + + SSS+ G+ SI
Sbjct: 593 SISSSSTSSTFSSASTSSPSSISSSISSSSTILSSPTPSTSSLMISSSSIISGSSSI 649
>SPCC1235.13 |ght6|meu12|hexose transporter Ght6
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 535
Score = 26.2 bits (55), Expect = 4.2
Identities = 10/30 (33%), Positives = 15/30 (50%)
Frame = +3
Query: 357 FQLFIDKYIVYLSVQQFGNHRYIIHKNSRW 446
+QLFI I + G H+Y H ++W
Sbjct: 151 YQLFITLGIFIAACINMGTHKYTTHPEAQW 180
>SPBC1198.07c |||mannan endo-1,6-alpha-mannosidase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 507
Score = 26.2 bits (55), Expect = 4.2
Identities = 15/47 (31%), Positives = 23/47 (48%)
Frame = +2
Query: 83 LHSFLNNSTCCSTYSSKLFNGQEERTLYFGFPLLLW*TDLKVKIGDF 223
L +F+NN+T Y S F G L+F +P W +K++ F
Sbjct: 26 LVAFVNNTTISKPYFSTFFEGGIHSLLFF-YPKRNWWFFIKMRYLSF 71
>SPAC4F10.02 |||aminopeptidase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 467
Score = 25.8 bits (54), Expect = 5.6
Identities = 16/37 (43%), Positives = 20/37 (54%), Gaps = 2/37 (5%)
Frame = +2
Query: 80 PLHSFL--NNSTCCSTYSSKLFNGQEERTLYFGFPLL 184
P+ SF+ N+S C ST KL RTL G P+L
Sbjct: 392 PIQSFVVRNDSPCGSTIGPKLAAMTGMRTLDLGNPML 428
>SPBC651.08c |rpc1||DNA-directed RNA polymerase III complex large
subunit Rpc1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1405
Score = 25.8 bits (54), Expect = 5.6
Identities = 9/33 (27%), Positives = 17/33 (51%)
Frame = -3
Query: 544 LLLVRYPNSTNAN*YYHLFLIKPWGTFHYRKCI 446
+L R P+ + HL ++PW T + +C+
Sbjct: 454 VLFNRQPSLHKLSIMAHLVKVRPWRTLRFNECV 486
>SPBC19C7.02 |ubr1|SPBC32F12.14|N-end-recognizing protein
Ubr1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1958
Score = 25.4 bits (53), Expect = 7.4
Identities = 11/34 (32%), Positives = 21/34 (61%)
Frame = +1
Query: 262 KSLISNRKAALFISCSNMAPSYLTTKNANKSLFN 363
+S + R+ +LF+ + S+L +++A KSL N
Sbjct: 12 RSALIRRRLSLFLQSHALMYSFLWSESAKKSLLN 45
>SPCC16A11.04 |snx12||sorting nexin Snx12 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1010
Score = 25.0 bits (52), Expect = 9.8
Identities = 11/32 (34%), Positives = 14/32 (43%)
Frame = -3
Query: 496 HLFLIKPWGTFHYRKCIHLLFLWIMYLWLPNC 401
H+F G F H F+ I+YLW C
Sbjct: 5 HIFYFITGGIFILWILAHSFFVKIIYLWASGC 36
>SPAC22A12.15c |bip1|bip|BiP |Schizosaccharomyces pombe|chr
1|||Manual
Length = 663
Score = 25.0 bits (52), Expect = 9.8
Identities = 13/37 (35%), Positives = 22/37 (59%)
Frame = -1
Query: 213 ILTLRSVYHSSKGKPKYKVLSSCPLNNFEEYVEQQVE 103
+LT+ +V S KGKP+ V+ + EE +E+ V+
Sbjct: 512 VLTVSAVDKSGKGKPEKLVIKNDKGRLSEEDIERMVK 548
>SPCC4B3.04c |nte1||lysophospholipase|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1316
Score = 25.0 bits (52), Expect = 9.8
Identities = 8/17 (47%), Positives = 12/17 (70%)
Frame = -3
Query: 496 HLFLIKPWGTFHYRKCI 446
H F+IKP G +Y+ C+
Sbjct: 582 HSFMIKPGGIVNYQACV 598
>SPCC11E10.05c |ynd1||nucleoside diphosphatase |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 572
Score = 25.0 bits (52), Expect = 9.8
Identities = 9/37 (24%), Positives = 20/37 (54%)
Frame = +1
Query: 166 FWFSFTAVVN*S*GQNWRFFWKLTQFYC*NQWKSLIS 276
FW++ V + ++ F+K YC +W++++S
Sbjct: 315 FWYTTNDVFDMGGSYHFPNFYKKVDEYCGTEWETMLS 351
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,749,329
Number of Sequences: 5004
Number of extensions: 60287
Number of successful extensions: 194
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 187
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 194
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 303841898
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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