Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30692
         (666 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_46063| Best HMM Match : Exo_endo_phos (HMM E-Value=0.00015)         31   0.64 
SB_27305| Best HMM Match : MFMR (HMM E-Value=0.53)                     28   7.9  
SB_29553| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.9  

>SB_46063| Best HMM Match : Exo_endo_phos (HMM E-Value=0.00015)
          Length = 798

 Score = 31.5 bits (68), Expect = 0.64
 Identities = 16/58 (27%), Positives = 29/58 (50%)
 Frame = -2

Query: 530 ISKLDKCKLILSPLLNKALGNISLPQMHPSTVLMDYVPMVTELLNRKIHDVLVNEKLK 357
           +S  +  K +   L NKA G   +P +       +  P+V EL N  + +V+VN+ ++
Sbjct: 567 VSSYEAYKSMRGILTNKAPGPDGIPALILKMFAFELSPIVAELYNTSLKEVMVNDLIR 624


>SB_27305| Best HMM Match : MFMR (HMM E-Value=0.53)
          Length = 823

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 15/41 (36%), Positives = 22/41 (53%)
 Frame = +1

Query: 262 KSLISNRKAALFISCSNMAPSYLTTKNANKSLFNFSLTSTS 384
           K LI +RKA LF+  +      ++ ++ NK  F F   STS
Sbjct: 687 KMLICDRKAKLFLPVNTSVCRRVSKEHKNKRCFLFHSVSTS 727


>SB_29553| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 573

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 13/30 (43%), Positives = 16/30 (53%), Gaps = 2/30 (6%)
 Frame = +2

Query: 506 VC-ICRVWISH**QCCVNGRDSLQC-HHYK 589
           VC IC VW++H   C V   D   C  HY+
Sbjct: 271 VCAICNVWLNHFNYCFVPDHDKFYCVQHYQ 300


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,280,788
Number of Sequences: 59808
Number of extensions: 400011
Number of successful extensions: 906
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 873
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 906
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1717720750
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)