Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30692
         (666 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g18690.1 68417.m02764 hypothetical protein similar to tumor-r...    30   1.6  
At5g56850.2 68418.m07093 expressed protein                             28   4.9  
At5g56850.1 68418.m07094 expressed protein                             28   4.9  
At1g65890.1 68414.m07477 acyl-activating enzyme 12 (AAE12) simil...    28   6.4  
At1g65880.1 68414.m07476 AMP-dependent synthetase and ligase fam...    28   6.4  
At5g05400.1 68418.m00582 disease resistance protein (CC-NBS-LRR ...    27   8.5  
At3g13040.2 68416.m01625 myb family transcription factor contain...    27   8.5  
At3g13040.1 68416.m01624 myb family transcription factor contain...    27   8.5  
At1g68270.1 68414.m07798 AMP-dependent synthetase and ligase fam...    27   8.5  
At1g66120.1 68414.m07504 acyl-activating enzyme 11 (AAE11) simil...    27   8.5  
At1g20380.1 68414.m02542 prolyl oligopeptidase, putative / proly...    27   8.5  

>At4g18690.1 68417.m02764 hypothetical protein similar to
           tumor-related protein [Nicotiana glauca x Nicotiana
           langsdorffii] GI:688423
          Length = 368

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 16/49 (32%), Positives = 24/49 (48%)
 Frame = -1

Query: 189 HSSKGKPKYKVLSSCPLNNFEEYVEQQVELFKNECKGSVTSSQLVSLEN 43
           H SK   K + L    +N+F++Y E++ EL +  C      S    LEN
Sbjct: 39  HRSKEDHKLEELVGKIVNDFQKYTEKRSELSRRSCSSYFAPSWNSPLEN 87


>At5g56850.2 68418.m07093 expressed protein
          Length = 413

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 13/39 (33%), Positives = 24/39 (61%)
 Frame = -3

Query: 274 KSMTSIGFNSRIGSISRKISNFDLKISLPQQ*RKTKIQS 158
           KSM     +S + ++ + ISNF++K++   + R  KIQ+
Sbjct: 153 KSMRRSMSDSNLNNVRKMISNFEVKVTQDTKIRTAKIQT 191


>At5g56850.1 68418.m07094 expressed protein
          Length = 551

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 13/39 (33%), Positives = 24/39 (61%)
 Frame = -3

Query: 274 KSMTSIGFNSRIGSISRKISNFDLKISLPQQ*RKTKIQS 158
           KSM     +S + ++ + ISNF++K++   + R  KIQ+
Sbjct: 291 KSMRRSMSDSNLNNVRKMISNFEVKVTQDTKIRTAKIQT 329


>At1g65890.1 68414.m07477 acyl-activating enzyme 12 (AAE12) similar
           to AMP-binding protein GI:1903034 from [Brassica napus];
           contains Pfam AMP-binding domain PF00501; identical to
           cDNA acyl-activating enzyme 12 (At1g65890) mRNA
           GI:29893228, acyl-activating enzyme 12 [Arabidopsis
           thaliana] GI:29893229
          Length = 578

 Score = 27.9 bits (59), Expect = 6.4
 Identities = 9/29 (31%), Positives = 21/29 (72%)
 Frame = +1

Query: 580 SL*SSDNLPTSTLSFIKNSTTCVPTQTSM 666
           +L  ++N+P + ++F+K ++ C P +TS+
Sbjct: 5   ALCEANNVPLTPITFLKRASECYPNRTSI 33


>At1g65880.1 68414.m07476 AMP-dependent synthetase and ligase family
           protein similar to AMP-binding protein GI:1903034 from
           [Brassica napus]; contains Pfam AMP-binding domain
           PF00501
          Length = 580

 Score = 27.9 bits (59), Expect = 6.4
 Identities = 9/29 (31%), Positives = 21/29 (72%)
 Frame = +1

Query: 580 SL*SSDNLPTSTLSFIKNSTTCVPTQTSM 666
           +L  ++N+P + ++F+K ++ C P +TS+
Sbjct: 5   ALCEANNVPLTPMTFLKRASECYPNRTSI 33


>At5g05400.1 68418.m00582 disease resistance protein (CC-NBS-LRR
           class), putative domain signature CC-NBS-LRR exists,
           suggestive of a disease resistance protein.
          Length = 874

 Score = 27.5 bits (58), Expect = 8.5
 Identities = 17/71 (23%), Positives = 33/71 (46%), Gaps = 1/71 (1%)
 Frame = -2

Query: 665 IEVWVGTHVVEFLIKLNVDVGRLSELYSDGIEENPGH*HSIVTSEISKLDKCKLILSPLL 486
           I +WV       + ++  D+G+  +LY++G E+   +  +       +  K  L+L  + 
Sbjct: 208 IAIWVVVSKNPTVKRIQEDIGKRLDLYNEGWEQKTENEIASTIKRSLENKKYMLLLDDMW 267

Query: 485 NKA-LGNISLP 456
            K  L NI +P
Sbjct: 268 TKVDLANIGIP 278


>At3g13040.2 68416.m01625 myb family transcription factor contains
           Pfam profile: PF00249 myb-like DNA-binding domain
          Length = 449

 Score = 27.5 bits (58), Expect = 8.5
 Identities = 16/46 (34%), Positives = 26/46 (56%)
 Frame = +1

Query: 277 NRKAALFISCSNMAPSYLTTKNANKSLFNFSLTSTSCIFLFSSSVT 414
           +RK     S S  +P  L  KN+++S F+ S T  + ++L SSS +
Sbjct: 45  HRKTPFIRSQSPDSPGQLWPKNSSQSTFSRSSTFCTNLYLSSSSTS 90


>At3g13040.1 68416.m01624 myb family transcription factor contains
           Pfam profile: PF00249 myb-like DNA-binding domain
          Length = 449

 Score = 27.5 bits (58), Expect = 8.5
 Identities = 16/46 (34%), Positives = 26/46 (56%)
 Frame = +1

Query: 277 NRKAALFISCSNMAPSYLTTKNANKSLFNFSLTSTSCIFLFSSSVT 414
           +RK     S S  +P  L  KN+++S F+ S T  + ++L SSS +
Sbjct: 45  HRKTPFIRSQSPDSPGQLWPKNSSQSTFSRSSTFCTNLYLSSSSTS 90


>At1g68270.1 68414.m07798 AMP-dependent synthetase and ligase family
           protein similar to AMP-binding protein GI:1903034 from
           [Brassica napus]; contains Pfam AMP-binding domain
           PF00501
          Length = 535

 Score = 27.5 bits (58), Expect = 8.5
 Identities = 8/25 (32%), Positives = 19/25 (76%)
 Frame = +1

Query: 592 SDNLPTSTLSFIKNSTTCVPTQTSM 666
           ++N+P + ++F+K ++ C P +TS+
Sbjct: 9   ANNVPLTPITFLKRASECYPNRTSI 33


>At1g66120.1 68414.m07504 acyl-activating enzyme 11 (AAE11) similar
           to AMP-binding protein GI:1903034 from [Brassica napus];
           contains Pfam AMP-binding domain PF00501; identical to
           cDNA acyl-activating enzyme 11 (At1g66120) GI:29893230,
           acyl-activating enzyme 11 [Arabidopsis thaliana]
           GI:29893231
          Length = 572

 Score = 27.5 bits (58), Expect = 8.5
 Identities = 8/25 (32%), Positives = 19/25 (76%)
 Frame = +1

Query: 592 SDNLPTSTLSFIKNSTTCVPTQTSM 666
           ++N+P + ++F+K ++ C P +TS+
Sbjct: 9   ANNVPLTPITFLKRASECYPNRTSI 33


>At1g20380.1 68414.m02542 prolyl oligopeptidase, putative / prolyl
           endopeptidase, putative / post-proline cleaving enzyme,
           putative similar to SP|P48147 Prolyl endopeptidase (EC
           3.4.21.26) (Post-proline cleaving enzyme) {Homo
           sapiens}; contains Pfam profiles PF00326: prolyl
           oligopeptidase family, PF02897: Prolyl oligopeptidase,
           N-terminal beta-propeller domain
          Length = 731

 Score = 27.5 bits (58), Expect = 8.5
 Identities = 14/45 (31%), Positives = 21/45 (46%)
 Frame = -1

Query: 192 YHSSKGKPKYKVLSSCPLNNFEEYVEQQVELFKNECKGSVTSSQL 58
           YH  K    Y+ L        +E+VE+QV+L  +  K   T  +L
Sbjct: 26  YHGVKVSDPYRWLEDPDAEEVKEFVEKQVQLSDSVLKSCETKEKL 70


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,793,551
Number of Sequences: 28952
Number of extensions: 294218
Number of successful extensions: 696
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 682
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 696
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1403159472
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)