Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30689
         (628 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC613.01 ||SPCC757.14|membrane transporter|Schizosaccharomyces...    29   0.73 
SPCC1795.11 |sum3|ded1, slh3, moc2|ATP-dependent RNA helicase Su...    28   0.96 
SPBC1289.09 |tim21||mitochondrial inner membrane presequence tra...    27   2.2  
SPBC56F2.03 |||actin-like protein Arp10 |Schizosaccharomyces pom...    27   2.2  
SPBC21C3.20c |git1||C2 domain protein Git1|Schizosaccharomyces p...    27   2.2  
SPBC29A3.01 |||heavy metal ATPase |Schizosaccharomyces pombe|chr...    26   3.9  
SPBC15C4.04c |||amino acid permease, unknown 10|Schizosaccharomy...    26   3.9  
SPBC1A4.05 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    26   3.9  
SPAC25G10.01 ||SPAC2C4.18|RNA-binding protein|Schizosaccharomyce...    25   6.8  
SPBC32H8.13c |mok12||alpha-1,3-glucan synthase Mok12|Schizosacch...    25   6.8  
SPAC3H1.12c |snt2||Lid2 complex subunit Snt2 |Schizosaccharomyce...    25   9.0  
SPBC21C3.02c |sds3||Sds3-like family protein|Schizosaccharomyces...    25   9.0  
SPAC23E2.02 |lsd2|swm2, saf140|histone demethylase SWIRM2 |Schiz...    25   9.0  

>SPCC613.01 ||SPCC757.14|membrane transporter|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 497

 Score = 28.7 bits (61), Expect = 0.73
 Identities = 20/66 (30%), Positives = 31/66 (46%), Gaps = 1/66 (1%)
 Frame = +3

Query: 222 TAARITANSR-TPRCSERTEGISLTVFETFLPLSPVGLLLQQLPDEQGRIRELFRKLSDD 398
           T  R++ +S  TP  SE   G S T F          + L+++PD+QG I      L  +
Sbjct: 18  TQRRLSRSSTITPSVSEYRSGFSKTAFGN--------IELEEIPDKQGNITRATSNLESN 69

Query: 399 SWEKTI 416
           S+ K +
Sbjct: 70  SYPKAL 75


>SPCC1795.11 |sum3|ded1, slh3, moc2|ATP-dependent RNA helicase
           Sum3|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 636

 Score = 28.3 bits (60), Expect = 0.96
 Identities = 14/34 (41%), Positives = 17/34 (50%)
 Frame = +1

Query: 304 RSYHYLLSASYFNNYQTNREGFANSSGNYRTIRG 405
           R  HY       NNY+  REG  ++ G YR  RG
Sbjct: 79  RGGHYGGGEGRQNNYRGGREGGYSNGGGYRNNRG 112


>SPBC1289.09 |tim21||mitochondrial inner membrane presequence
           translocase complex subunit Tim21 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 223

 Score = 27.1 bits (57), Expect = 2.2
 Identities = 15/53 (28%), Positives = 25/53 (47%)
 Frame = +3

Query: 249 RTPRCSERTEGISLTVFETFLPLSPVGLLLQQLPDEQGRIRELFRKLSDDSWE 407
           RT +    T   S  V      L+   L  Q+ P E+GR+  +F+  S+ +W+
Sbjct: 3   RTIQRQSATRFSSALVQRRLYSLASDSLNKQRKPQEEGRLARIFKDPSNKAWK 55


>SPBC56F2.03 |||actin-like protein Arp10 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 380

 Score = 27.1 bits (57), Expect = 2.2
 Identities = 11/24 (45%), Positives = 17/24 (70%)
 Frame = +3

Query: 129 SLPVWLWVCWPRKTHAIRTSTKDA 200
           ++P+ LW+C P  T  + TST+DA
Sbjct: 94  NVPITLWICAP-LTAILSTSTRDA 116


>SPBC21C3.20c |git1||C2 domain protein Git1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1098

 Score = 27.1 bits (57), Expect = 2.2
 Identities = 10/18 (55%), Positives = 13/18 (72%)
 Frame = +3

Query: 33  KAVLSTYVKRTCYFFENS 86
           KAV   YV+R CY+ EN+
Sbjct: 271 KAVFDKYVERECYYSENA 288


>SPBC29A3.01 |||heavy metal ATPase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 904

 Score = 26.2 bits (55), Expect = 3.9
 Identities = 15/44 (34%), Positives = 21/44 (47%)
 Frame = +3

Query: 489 KGSNYTVRSATRSEPWPKPWTRRSSLPRGFSSSTGKSLKTATSS 620
           +GS+Y   S+   EP P   T    L  G ++  G+ L  AT S
Sbjct: 357 EGSSYVDESSVSGEPVPVHKTIDDELLSGTANGNGRLLVKATKS 400


>SPBC15C4.04c |||amino acid permease, unknown 10|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 542

 Score = 26.2 bits (55), Expect = 3.9
 Identities = 9/30 (30%), Positives = 18/30 (60%)
 Frame = -2

Query: 597 TSLWMKKILSASCFCVSKALARAPISWPTS 508
           +++W   I  A C C++ ++A    ++PTS
Sbjct: 95  SAVWCWLIAGAGCMCIALSVAELVSAYPTS 124


>SPBC1A4.05 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 700

 Score = 26.2 bits (55), Expect = 3.9
 Identities = 22/64 (34%), Positives = 28/64 (43%), Gaps = 1/64 (1%)
 Frame = +3

Query: 432 VTKRGGKMDFSSHTTLKGDKGSNYTVRSATRSEPWPKP-WTRRSSLPRGFSSSTGKSLKT 608
           VT    K  FSS +       S   VR +T      KP W+RR +   GFSS + +    
Sbjct: 625 VTLPNSKKRFSSFS----GSSSKLPVRPSTALTDKRKPSWSRRLAAAIGFSSGSPEKKHV 680

Query: 609 ATSS 620
            TSS
Sbjct: 681 ITSS 684


>SPAC25G10.01 ||SPAC2C4.18|RNA-binding protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 297

 Score = 25.4 bits (53), Expect = 6.8
 Identities = 13/36 (36%), Positives = 19/36 (52%)
 Frame = +1

Query: 295 YLKRSYHYLLSASYFNNYQTNREGFANSSGNYRTIR 402
           Y + +Y    S  Y N+Y+ +R    +S GNYR  R
Sbjct: 211 YRRNNYRDRDSNRYRNSYRPSRPQREHSPGNYRKER 246


>SPBC32H8.13c |mok12||alpha-1,3-glucan synthase
            Mok12|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2352

 Score = 25.4 bits (53), Expect = 6.8
 Identities = 13/34 (38%), Positives = 17/34 (50%)
 Frame = +3

Query: 297  FETFLPLSPVGLLLQQLPDEQGRIRELFRKLSDD 398
            F   LPL     LL+QLP+ + R+  L   L  D
Sbjct: 1147 FSVHLPLDNSSELLKQLPESEKRLNVLVATLEYD 1180


>SPAC3H1.12c |snt2||Lid2 complex subunit Snt2 |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1131

 Score = 25.0 bits (52), Expect = 9.0
 Identities = 8/28 (28%), Positives = 12/28 (42%)
 Frame = -2

Query: 570  SASCFCVSKALARAPISWPTSRCSCCPC 487
            + +C C       +P  WP + C  C C
Sbjct: 1100 NVACCCSKCNSTMSPFWWPGNICQACHC 1127


>SPBC21C3.02c |sds3||Sds3-like family protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 491

 Score = 25.0 bits (52), Expect = 9.0
 Identities = 10/41 (24%), Positives = 21/41 (51%)
 Frame = +2

Query: 452 DGLLESHHTERRQGQQLHREVGHEIGALAKALDTQKQLAER 574
           +GL+E++H  + +    H E   E   + +  D+  Q+ +R
Sbjct: 190 NGLIETNHNSKLEESSEHEEEEDEESNIERTEDSDHQIPQR 230


>SPAC23E2.02 |lsd2|swm2, saf140|histone demethylase SWIRM2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1273

 Score = 25.0 bits (52), Expect = 9.0
 Identities = 9/17 (52%), Positives = 13/17 (76%)
 Frame = +1

Query: 88  H*INRIKYEGVCSHRCL 138
           H I+R++ +GVC  RCL
Sbjct: 446 HAISRVEAQGVCVDRCL 462


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,628,978
Number of Sequences: 5004
Number of extensions: 53561
Number of successful extensions: 168
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 167
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 168
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 277683324
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)