Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV30689
(628 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_05_0583 + 30128795-30129158,30129342-30129505,30129602-301296... 31 0.57
08_02_0210 + 14324539-14324609,14324735-14325740,14325838-143273... 30 1.3
03_02_0497 - 8891852-8892270,8892368-8892473,8892573-8892911,889... 28 5.3
01_04_0143 + 16689471-16689498,16689687-16689818,16689974-166900... 28 5.3
10_08_0959 - 21813756-21814097,21814462-21814570,21814688-218147... 28 7.0
08_02_0829 - 21604845-21605588 28 7.0
03_06_0368 - 33418918-33419031,33419132-33419530,33419680-334198... 28 7.0
03_05_1160 + 30826972-30828375,30828641-30828754,30828901-308290... 28 7.0
06_01_1168 - 9949128-9950621 27 9.2
>02_05_0583 +
30128795-30129158,30129342-30129505,30129602-30129665,
30130082-30130215,30130369-30130452,30130580-30130654,
30130734-30130805,30130892-30130965,30131217-30131269,
30131388-30131497,30131824-30131892,30131975-30132049,
30132449-30132508,30132555-30132647,30132718-30132797,
30132877-30132976,30133153-30133590
Length = 702
Score = 31.5 bits (68), Expect = 0.57
Identities = 16/57 (28%), Positives = 26/57 (45%)
Frame = +3
Query: 438 KRGGKMDFSSHTTLKGDKGSNYTVRSATRSEPWPKPWTRRSSLPRGFSSSTGKSLKT 608
K+G K + T +KGD+ + T + P + S+P+ S + GK L T
Sbjct: 630 KKGKKRNGPESTKIKGDQKETHNEEEPTSEKKQPVSAKIKKSVPKRISGNKGKKLDT 686
>08_02_0210 +
14324539-14324609,14324735-14325740,14325838-14327390,
14327473-14327601,14328345-14328510
Length = 974
Score = 30.3 bits (65), Expect = 1.3
Identities = 15/39 (38%), Positives = 20/39 (51%)
Frame = +1
Query: 82 IRH*INRIKYEGVCSHRCLSGSGCAGRGRLMLSERRPRM 198
IRH +N K+ C +SG C L++S R PRM
Sbjct: 739 IRHRVNLAKHTCTCREWQVSGKPCPHALALIISTRNPRM 777
>03_02_0497 -
8891852-8892270,8892368-8892473,8892573-8892911,
8893065-8893415
Length = 404
Score = 28.3 bits (60), Expect = 5.3
Identities = 15/40 (37%), Positives = 18/40 (45%)
Frame = -3
Query: 590 CG*RKSSRQAASACPRLWPGLRSRGRPHGVVAALVAFQCG 471
CG R+ + SACP PG G G + VA CG
Sbjct: 84 CGRRRDMEDSVSACPGFLPGHHFFGVFDGHGCSHVATSCG 123
>01_04_0143 +
16689471-16689498,16689687-16689818,16689974-16690013,
16690214-16690280,16690349-16690431,16690755-16690821,
16692741-16692821,16693696-16693791,16694172-16694198
Length = 206
Score = 28.3 bits (60), Expect = 5.3
Identities = 12/31 (38%), Positives = 18/31 (58%), Gaps = 1/31 (3%)
Frame = +3
Query: 66 CYFFENSPLNKSHQI*RCMLS-SLPVWLWVC 155
CY E + L++ HQI C ++ S V +W C
Sbjct: 71 CYHLEEADLHQCHQILTCTINGSSLVMIWCC 101
>10_08_0959 - 21813756-21814097,21814462-21814570,21814688-21814740,
21814849-21815049,21815320-21815433,21815513-21815671,
21816490-21816849,21816928-21817149,21817967-21818093,
21818887-21819023,21819169-21819292,21819665-21820174,
21820255-21820436,21820812-21820862,21821114-21821266,
21821339-21821437,21821519-21821861,21821957-21822030,
21822105-21823025,21823133-21823257,21823419-21823461,
21823574-21823762,21824814-21825074,21825228-21825387,
21826200-21826363,21826523-21827009,21827090-21827431,
21827519-21827836,21828001-21828041,21828136-21828388,
21829158-21829261,21830198-21830386,21830543-21831196,
21831320-21831610,21831739-21831882,21832107-21832205,
21832549-21832657,21832739-21832923,21833008-21833121,
21833270-21833401,21833483-21833815,21833945-21834436,
21834773-21834847,21834917-21835066,21835143-21835241,
21835463-21835547,21837188-21837375,21837513-21837647,
21837729-21837849,21838127-21838194,21838275-21838370,
21838450-21838554,21838665-21838980,21839053-21839142,
21840011-21840181,21840850-21841010,21841088-21841270,
21841839-21841940,21842515-21842632,21842704-21842798,
21842972-21843022,21843107-21843241,21843333-21843436,
21844249-21844414,21844649-21844773,21845220-21845316
Length = 4181
Score = 27.9 bits (59), Expect = 7.0
Identities = 19/58 (32%), Positives = 26/58 (44%)
Frame = +1
Query: 289 SLYLKRSYHYLLSASYFNNYQTNREGFANSSGNYRTIRGRKPLVS*STSLRGVGRWTS 462
S YL S HY+LSAS+ + T+ + G ++ P SL G WTS
Sbjct: 3004 SYYLPISAHYVLSASHLDEEDTSCSQGTLNPGEVVRVQNVDPRNPLYLSLVPHGGWTS 3061
>08_02_0829 - 21604845-21605588
Length = 247
Score = 27.9 bits (59), Expect = 7.0
Identities = 13/39 (33%), Positives = 24/39 (61%)
Frame = +3
Query: 510 RSATRSEPWPKPWTRRSSLPRGFSSSTGKSLKTATSSTM 626
R+++ +E W R ++ G S+ST +++KT TS+ M
Sbjct: 166 RASSTAERWDINKKPRPAVGSGKSNSTSRTMKTTTSAQM 204
>03_06_0368 -
33418918-33419031,33419132-33419530,33419680-33419805,
33419880-33420096,33420178-33420272,33420840-33421060,
33421149-33421222,33421362-33421484,33421814-33421854,
33421933-33422134,33422245-33422504,33422669-33422798,
33423037-33423317
Length = 760
Score = 27.9 bits (59), Expect = 7.0
Identities = 18/59 (30%), Positives = 32/59 (54%)
Frame = +2
Query: 446 WEDGLLESHHTERRQGQQLHREVGHEIGALAKALDTQKQLAERIFFIHREVTKNSDLLH 622
W D L++H R ++LH +++ +A ALDT Q +RI I +T N+ +++
Sbjct: 201 WRDEGLDNHPVNRMSLKELH----NQVITVATALDTMFQKGDRI-AIDMPMTCNAVIIY 254
>03_05_1160 +
30826972-30828375,30828641-30828754,30828901-30829032,
30830087-30830224
Length = 595
Score = 27.9 bits (59), Expect = 7.0
Identities = 21/57 (36%), Positives = 30/57 (52%), Gaps = 3/57 (5%)
Frame = +3
Query: 462 SSHTTLKGDKGSNYTV---RSATRSEPWPKPWTRRSSLPRGFSSSTGKSLKTATSST 623
SS GD GS+ + S + + W K +R+S +P+GF ST S +A SST
Sbjct: 120 SSEGHSDGDDGSDCEILDDASGSARKQWEKAASRKS-MPQGFRKST--STSSAESST 173
>06_01_1168 - 9949128-9950621
Length = 497
Score = 27.5 bits (58), Expect = 9.2
Identities = 15/43 (34%), Positives = 22/43 (51%)
Frame = -3
Query: 539 WPGLRSRGRPHGVVAALVAFQCGVTREVHLPTPLSDVLYETNG 411
W R+ G PH VVA L F CG T+ + + V++ +G
Sbjct: 117 WARARA-GTPHRVVAVLSDFLCGWTQPLANELGVPHVVFSPSG 158
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,213,682
Number of Sequences: 37544
Number of extensions: 397444
Number of successful extensions: 1302
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1255
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1300
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1525730988
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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