Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV30689
(628 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_19839| Best HMM Match : Ery_res_leader2 (HMM E-Value=9.9) 39 0.003
SB_38764| Best HMM Match : CBM_14 (HMM E-Value=1.5e-10) 35 0.047
SB_27121| Best HMM Match : CBM_14 (HMM E-Value=5.8e-29) 32 0.33
SB_3033| Best HMM Match : RRM_1 (HMM E-Value=2.3e-20) 31 0.77
SB_8257| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.1
SB_35570| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.4
SB_33595| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.4
SB_11394| Best HMM Match : GntR (HMM E-Value=7.9) 28 5.4
SB_38601| Best HMM Match : MMR_HSR1 (HMM E-Value=0.055) 28 5.4
SB_12078| Best HMM Match : Ubie_methyltran (HMM E-Value=0.17) 28 5.4
SB_35703| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.1
SB_10903| Best HMM Match : Aldolase_II (HMM E-Value=9.1e-17) 28 7.1
SB_41459| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.1
SB_47601| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.4
SB_42365| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.4
SB_33499| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.4
SB_9343| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.4
>SB_19839| Best HMM Match : Ery_res_leader2 (HMM E-Value=9.9)
Length = 117
Score = 39.1 bits (87), Expect = 0.003
Identities = 23/53 (43%), Positives = 31/53 (58%), Gaps = 2/53 (3%)
Frame = +1
Query: 118 VCSHRCLSGSGCAGRGRLMLSERRPRMQTDFKSAALQRVLRP--IQGHHVVAN 270
V SH LSG GC G+GR + E++ R +A LQ +LR I GH+ V+N
Sbjct: 56 VWSHLHLSGGGC-GKGRHLPKEKQSRGSPPISAALLQHILRAAYIAGHYWVSN 107
>SB_38764| Best HMM Match : CBM_14 (HMM E-Value=1.5e-10)
Length = 155
Score = 35.1 bits (77), Expect = 0.047
Identities = 17/47 (36%), Positives = 27/47 (57%)
Frame = +2
Query: 98 IASNMKVYALIVACLALGVLAEEDSCYQNVDQGCRRTLSLPHCSAYY 238
++S+MK L++AC ++ E+D C + D GC + L CS YY
Sbjct: 46 MSSDMKSLVLLIACFSVARATEDDFCKER-DAGC--YVDLKDCSKYY 89
>SB_27121| Best HMM Match : CBM_14 (HMM E-Value=5.8e-29)
Length = 339
Score = 32.3 bits (70), Expect = 0.33
Identities = 16/43 (37%), Positives = 23/43 (53%)
Frame = +2
Query: 110 MKVYALIVACLALGVLAEEDSCYQNVDQGCRRTLSLPHCSAYY 238
MK L++AC ++ E+D C + D GC + L CS YY
Sbjct: 1 MKSLVLLIACFSVARATEDDYCKER-DAGC--YVDLKDCSKYY 40
>SB_3033| Best HMM Match : RRM_1 (HMM E-Value=2.3e-20)
Length = 1313
Score = 31.1 bits (67), Expect = 0.77
Identities = 19/48 (39%), Positives = 27/48 (56%)
Frame = +3
Query: 480 KGDKGSNYTVRSATRSEPWPKPWTRRSSLPRGFSSSTGKSLKTATSST 623
K + S+ RS TR + KP R+SS SSS+G S +++SST
Sbjct: 985 KEKRTSSTRGRSPTRKDKKDKPARRQSSSSSSSSSSSGSSSYSSSSST 1032
>SB_8257| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 710
Score = 29.1 bits (62), Expect = 3.1
Identities = 23/79 (29%), Positives = 39/79 (49%), Gaps = 1/79 (1%)
Frame = +3
Query: 255 PRCSERTEGISL-TVFETFLPLSPVGLLLQQLPDEQGRIRELFRKLSDDSWEKTIGLIKH 431
PR S +G++L +VF + LS V ++ LP Q E R + + KTI +
Sbjct: 406 PRSSRIAKGLALWSVF--IITLSTVSFCVETLPQFQHDKIEKIRHATSHAHNKTILQRVN 463
Query: 432 VTKRGGKMDFSSHTTLKGD 488
VTK ++ + T++G+
Sbjct: 464 VTKGNTTVEVLVNKTIRGE 482
>SB_35570| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 663
Score = 28.3 bits (60), Expect = 5.4
Identities = 14/47 (29%), Positives = 25/47 (53%)
Frame = +2
Query: 464 ESHHTERRQGQQLHREVGHEIGALAKALDTQKQLAERIFFIHREVTK 604
E H R+ ++LHR L+KA + ++A ++ +H+ VTK
Sbjct: 550 ELHDEMNRRKRELHRRDRDRKSVLSKAKEQVVRVATVLYALHQPVTK 596
>SB_33595| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 901
Score = 28.3 bits (60), Expect = 5.4
Identities = 14/40 (35%), Positives = 19/40 (47%)
Frame = +3
Query: 456 DFSSHTTLKGDKGSNYTVRSATRSEPWPKPWTRRSSLPRG 575
DF + +GDKGS A + P W+ R+ LP G
Sbjct: 597 DFEAEQVFEGDKGSLLRRTMAFTGKFEPVKWSCRAPLPNG 636
>SB_11394| Best HMM Match : GntR (HMM E-Value=7.9)
Length = 451
Score = 28.3 bits (60), Expect = 5.4
Identities = 13/37 (35%), Positives = 19/37 (51%), Gaps = 2/37 (5%)
Frame = -2
Query: 579 KILSASC--FCVSKALARAPISWPTSRCSCCPCRLSV 475
+++ SC C S +A A + P +CC CRL V
Sbjct: 383 RVVCCSCRVVCCSCRVAHAVLRVPHGAVACCSCRLGV 419
>SB_38601| Best HMM Match : MMR_HSR1 (HMM E-Value=0.055)
Length = 882
Score = 28.3 bits (60), Expect = 5.4
Identities = 12/25 (48%), Positives = 15/25 (60%), Gaps = 1/25 (4%)
Frame = +3
Query: 474 TLKGDKGSNYTV-RSATRSEPWPKP 545
T +GD G+N T S+T PWP P
Sbjct: 650 TPQGDSGANLTTDTSSTGGSPWPSP 674
>SB_12078| Best HMM Match : Ubie_methyltran (HMM E-Value=0.17)
Length = 237
Score = 28.3 bits (60), Expect = 5.4
Identities = 12/32 (37%), Positives = 18/32 (56%)
Frame = +3
Query: 393 DDSWEKTIGLIKHVTKRGGKMDFSSHTTLKGD 488
+DS ++ +G +K V K GG+ F H K D
Sbjct: 160 EDSLDQLLGEVKRVLKPGGRFYFIEHIADKSD 191
>SB_35703| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 873
Score = 27.9 bits (59), Expect = 7.1
Identities = 13/40 (32%), Positives = 24/40 (60%)
Frame = +2
Query: 377 LQEIIGRFVGENHWSHKARH*EGWEDGLLESHHTERRQGQ 496
L IIG F+G + S KA+ G++DG+ +++ +G+
Sbjct: 185 LDVIIGTFIGPQNASSKAQGFLGYQDGVFQTNFMPDFRGE 224
>SB_10903| Best HMM Match : Aldolase_II (HMM E-Value=9.1e-17)
Length = 280
Score = 27.9 bits (59), Expect = 7.1
Identities = 11/23 (47%), Positives = 15/23 (65%)
Frame = +1
Query: 109 YEGVCSHRCLSGSGCAGRGRLML 177
+EGVC+H + G G GR+ML
Sbjct: 63 HEGVCNHLSMMAPGKHGTGRVML 85
>SB_41459| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1675
Score = 27.9 bits (59), Expect = 7.1
Identities = 18/56 (32%), Positives = 26/56 (46%)
Frame = +3
Query: 282 ISLTVFETFLPLSPVGLLLQQLPDEQGRIRELFRKLSDDSWEKTIGLIKHVTKRGG 449
+S+ E LP PV L + IR L ++DD +E T L+ K+GG
Sbjct: 1256 LSMMALENDLPKLPVPALDDTMDKYLNAIRPL---INDDDFENTQVLVNEFRKKGG 1308
>SB_47601| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 652
Score = 27.5 bits (58), Expect = 9.4
Identities = 15/32 (46%), Positives = 19/32 (59%), Gaps = 6/32 (18%)
Frame = +3
Query: 522 RSEPWPKPWTRRS------SLPRGFSSSTGKS 599
R+ +PKPW+ S SLPR FSS T K+
Sbjct: 541 RAATFPKPWSSTSTVPSSRSLPRKFSSETEKN 572
>SB_42365| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 791
Score = 27.5 bits (58), Expect = 9.4
Identities = 18/49 (36%), Positives = 27/49 (55%), Gaps = 6/49 (12%)
Frame = +3
Query: 495 SNYTVRSATR--SEPWPKPWTRRSS----LPRGFSSSTGKSLKTATSST 623
S YT ++TR S+ W PW R +S PR SSS ++++SS+
Sbjct: 161 SGYTGITSTRFGSDEWHDPWQRTTSPKRRSPRRSSSSYSSRSRSSSSSS 209
>SB_33499| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 486
Score = 27.5 bits (58), Expect = 9.4
Identities = 11/36 (30%), Positives = 23/36 (63%)
Frame = +1
Query: 34 RQYFRHTSNALVIFSRIRH*INRIKYEGVCSHRCLS 141
R + RH ++ +F R+ H NR++Y+G ++ C++
Sbjct: 367 RSHVRHEAS---LFGRMNHYENRVEYKGFTANICIA 399
>SB_9343| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 786
Score = 27.5 bits (58), Expect = 9.4
Identities = 16/48 (33%), Positives = 23/48 (47%)
Frame = +3
Query: 480 KGDKGSNYTVRSATRSEPWPKPWTRRSSLPRGFSSSTGKSLKTATSST 623
K D + + SEP P + SS G SSS+G S + +SS+
Sbjct: 676 KKDSHTEQRIIDVVGSEPRPTRLSASSSSSSGSSSSSGSSSSSGSSSS 723
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,470,655
Number of Sequences: 59808
Number of extensions: 430693
Number of successful extensions: 1371
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 1258
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1369
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1560464625
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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