Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30689
         (628 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z99281-31|CAI79273.1|  160|Caenorhabditis elegans Hypothetical p...    30   1.6  
U41274-6|AAA82462.1|  601|Caenorhabditis elegans Hypothetical pr...    29   2.7  
U39678-4|AAK39211.2|  330|Caenorhabditis elegans Hypothetical pr...    28   4.8  

>Z99281-31|CAI79273.1|  160|Caenorhabditis elegans Hypothetical
           protein Y57G11C.51 protein.
          Length = 160

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 23/81 (28%), Positives = 34/81 (41%), Gaps = 1/81 (1%)
 Frame = +3

Query: 381 RKLSDDS-WEKTIGLIKHVTKRGGKMDFSSHTTLKGDKGSNYTVRSATRSEPWPKPWTRR 557
           ++LSD   WE+     K V +   + + S+      D G +   + + R  P P P T  
Sbjct: 70  KRLSDKKRWEELNDAAKEVVRANAR-EASARRRAGRDAGLSANPKRSPRWSPQPDPSTPS 128

Query: 558 SSLPRGFSSSTGKSLKTATSS 620
           SS     SSS   S    TS+
Sbjct: 129 SSTSSSTSSSPSSSSTPLTST 149


>U41274-6|AAA82462.1|  601|Caenorhabditis elegans Hypothetical
           protein T04G9.6 protein.
          Length = 601

 Score = 29.1 bits (62), Expect = 2.7
 Identities = 15/48 (31%), Positives = 23/48 (47%)
 Frame = +3

Query: 237 TANSRTPRCSERTEGISLTVFETFLPLSPVGLLLQQLPDEQGRIRELF 380
           T    TP   E +E   L  FE++  L+ +G  L    +EQ ++R  F
Sbjct: 213 TPEPSTPESVETSEKSHLLSFESYFQLASMGSELMTYSEEQRQVRNYF 260


>U39678-4|AAK39211.2|  330|Caenorhabditis elegans Hypothetical
           protein C39D10.3a protein.
          Length = 330

 Score = 28.3 bits (60), Expect = 4.8
 Identities = 17/42 (40%), Positives = 23/42 (54%), Gaps = 4/42 (9%)
 Frame = +1

Query: 163 GRLMLSERRPRMQT----DFKSAALQRVLRPIQGHHVVANEL 276
           GRLML  ++  M+T    DFKSA L   L P+    V++  L
Sbjct: 115 GRLMLVTKKHHMETDSILDFKSAILPFALDPLSNEPVISVSL 156


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,719,598
Number of Sequences: 27780
Number of extensions: 311660
Number of successful extensions: 994
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 936
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 994
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1374536540
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)