Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV30689
(628 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
X52884-1|CAA37066.1| 461|Apis mellifera elongation factor 1 alp... 25 0.46
AY208278-1|AAO48970.1| 274|Apis mellifera elongation factor 1-a... 24 1.1
AF015267-1|AAC38959.1| 461|Apis mellifera elongation factor-1al... 24 1.1
AY350618-1|AAQ57660.1| 425|Apis mellifera complementary sex det... 24 1.4
AY569781-1|AAS75781.1| 461|Apis mellifera neuronal nicotinic ac... 23 3.2
EF531707-1|ABP57431.1| 138|Apis mellifera structural cuticle pr... 22 4.3
DQ325121-1|ABD14135.1| 181|Apis mellifera complementary sex det... 22 5.6
DQ325120-1|ABD14134.1| 181|Apis mellifera complementary sex det... 22 5.6
DQ325119-1|ABD14133.1| 181|Apis mellifera complementary sex det... 22 5.6
DQ325118-1|ABD14132.1| 181|Apis mellifera complementary sex det... 22 5.6
DQ325117-1|ABD14131.1| 181|Apis mellifera complementary sex det... 22 5.6
DQ325116-1|ABD14130.1| 181|Apis mellifera complementary sex det... 22 5.6
DQ325114-1|ABD14128.1| 181|Apis mellifera complementary sex det... 22 5.6
>X52884-1|CAA37066.1| 461|Apis mellifera elongation factor 1 alpha
protein.
Length = 461
Score = 25.4 bits (53), Expect = 0.46
Identities = 13/46 (28%), Positives = 20/46 (43%)
Frame = +1
Query: 136 LSGSGCAGRGRLMLSERRPRMQTDFKSAALQRVLRPIQGHHVVANE 273
+ G G GR+ +P M F AAL ++ ++ HH E
Sbjct: 256 IGGIGTVPVGRVETGILKPGMLVTFAPAALTTEVKSVEMHHEALTE 301
>AY208278-1|AAO48970.1| 274|Apis mellifera elongation factor
1-alpha protein.
Length = 274
Score = 24.2 bits (50), Expect = 1.1
Identities = 12/46 (26%), Positives = 19/46 (41%)
Frame = +1
Query: 136 LSGSGCAGRGRLMLSERRPRMQTDFKSAALQRVLRPIQGHHVVANE 273
+ G G GR+ +P M F A L ++ ++ HH E
Sbjct: 199 IGGIGTVPVGRVETGVLKPGMVVTFAPAGLTTEVKSVEMHHEALQE 244
>AF015267-1|AAC38959.1| 461|Apis mellifera elongation factor-1alpha
F2 protein.
Length = 461
Score = 24.2 bits (50), Expect = 1.1
Identities = 12/46 (26%), Positives = 19/46 (41%)
Frame = +1
Query: 136 LSGSGCAGRGRLMLSERRPRMQTDFKSAALQRVLRPIQGHHVVANE 273
+ G G GR+ +P M F A L ++ ++ HH E
Sbjct: 256 IGGIGTVPVGRVETGVLKPGMVVTFAPAGLTTEVKSVEMHHEALQE 301
>AY350618-1|AAQ57660.1| 425|Apis mellifera complementary sex
determiner protein.
Length = 425
Score = 23.8 bits (49), Expect = 1.4
Identities = 14/42 (33%), Positives = 21/42 (50%)
Frame = +1
Query: 265 ANELKALASLYLKRSYHYLLSASYFNNYQTNREGFANSSGNY 390
+ E K ++SL +Y Y S +NNY N + N + NY
Sbjct: 309 SKEPKIISSL--SNNYKY----SNYNNYNNNYNNYNNYNNNY 344
>AY569781-1|AAS75781.1| 461|Apis mellifera neuronal nicotinic
acetylcholine Apisa7-2 subunit protein.
Length = 461
Score = 22.6 bits (46), Expect = 3.2
Identities = 10/20 (50%), Positives = 13/20 (65%)
Frame = +1
Query: 166 RLMLSERRPRMQTDFKSAAL 225
RL +RR RM+ D+K AL
Sbjct: 407 RLAEQDRRERMEFDWKQVAL 426
>EF531707-1|ABP57431.1| 138|Apis mellifera structural cuticle
protein protein.
Length = 138
Score = 22.2 bits (45), Expect = 4.3
Identities = 9/31 (29%), Positives = 16/31 (51%)
Frame = +1
Query: 331 SYFNNYQTNREGFANSSGNYRTIRGRKPLVS 423
+Y NN++T+ SG + + P+VS
Sbjct: 41 NYINNFETSNGISHQESGQPKQVDNETPVVS 71
>DQ325121-1|ABD14135.1| 181|Apis mellifera complementary sex
determiner protein.
Length = 181
Score = 21.8 bits (44), Expect = 5.6
Identities = 9/20 (45%), Positives = 11/20 (55%)
Frame = +1
Query: 298 LKRSYHYLLSASYFNNYQTN 357
L +Y Y +Y NNY TN
Sbjct: 85 LSNNYKYSNYNNYNNNYNTN 104
>DQ325120-1|ABD14134.1| 181|Apis mellifera complementary sex
determiner protein.
Length = 181
Score = 21.8 bits (44), Expect = 5.6
Identities = 9/20 (45%), Positives = 11/20 (55%)
Frame = +1
Query: 298 LKRSYHYLLSASYFNNYQTN 357
L +Y Y +Y NNY TN
Sbjct: 85 LSNNYKYSNYNNYNNNYNTN 104
>DQ325119-1|ABD14133.1| 181|Apis mellifera complementary sex
determiner protein.
Length = 181
Score = 21.8 bits (44), Expect = 5.6
Identities = 9/20 (45%), Positives = 11/20 (55%)
Frame = +1
Query: 298 LKRSYHYLLSASYFNNYQTN 357
L +Y Y +Y NNY TN
Sbjct: 85 LSNNYKYSNYNNYNNNYNTN 104
>DQ325118-1|ABD14132.1| 181|Apis mellifera complementary sex
determiner protein.
Length = 181
Score = 21.8 bits (44), Expect = 5.6
Identities = 9/20 (45%), Positives = 11/20 (55%)
Frame = +1
Query: 298 LKRSYHYLLSASYFNNYQTN 357
L +Y Y +Y NNY TN
Sbjct: 85 LSNNYKYSNYNNYNNNYNTN 104
>DQ325117-1|ABD14131.1| 181|Apis mellifera complementary sex
determiner protein.
Length = 181
Score = 21.8 bits (44), Expect = 5.6
Identities = 9/20 (45%), Positives = 11/20 (55%)
Frame = +1
Query: 298 LKRSYHYLLSASYFNNYQTN 357
L +Y Y +Y NNY TN
Sbjct: 85 LSNNYKYSNYNNYNNNYNTN 104
>DQ325116-1|ABD14130.1| 181|Apis mellifera complementary sex
determiner protein.
Length = 181
Score = 21.8 bits (44), Expect = 5.6
Identities = 9/20 (45%), Positives = 11/20 (55%)
Frame = +1
Query: 298 LKRSYHYLLSASYFNNYQTN 357
L +Y Y +Y NNY TN
Sbjct: 85 LSNNYKYSNYNNYNNNYNTN 104
>DQ325114-1|ABD14128.1| 181|Apis mellifera complementary sex
determiner protein.
Length = 181
Score = 21.8 bits (44), Expect = 5.6
Identities = 9/20 (45%), Positives = 11/20 (55%)
Frame = +1
Query: 298 LKRSYHYLLSASYFNNYQTN 357
L +Y Y +Y NNY TN
Sbjct: 85 LSNNYKYSNYNNYNNNYNTN 104
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 180,986
Number of Sequences: 438
Number of extensions: 3780
Number of successful extensions: 16
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18704709
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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