Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV30689
(628 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g68670.1 68414.m07846 myb family transcription factor contain... 32 0.36
At4g31450.1 68417.m04469 zinc finger (C3HC4-type RING finger) fa... 30 1.4
At3g62110.1 68416.m06978 glycoside hydrolase family 28 protein /... 30 1.4
At5g02620.1 68418.m00198 ankyrin repeat family protein contains ... 29 2.5
At2g20860.1 68415.m02458 lipoic acid synthase (LIP1) identical t... 29 3.3
At4g09630.1 68417.m01583 expressed protein contains Pfam profile... 28 5.8
At1g79430.2 68414.m09257 myb family transcription factor-related 28 5.8
At1g79430.1 68414.m09256 myb family transcription factor-related 28 5.8
At5g39590.1 68418.m04795 expressed protein 27 7.7
At3g45830.1 68416.m04960 expressed protein 27 7.7
At2g31960.1 68415.m03905 glycosyl transferase family 48 protein ... 27 7.7
At2g26660.1 68415.m03198 SPX (SYG1/Pho81/XPR1) domain-containing... 27 7.7
At1g66450.1 68414.m07549 DC1 domain-containing protein contains ... 27 7.7
>At1g68670.1 68414.m07846 myb family transcription factor contains
Pfam domain, PF00249: Myb-like DNA-binding domain
Length = 354
Score = 31.9 bits (69), Expect = 0.36
Identities = 14/49 (28%), Positives = 27/49 (55%), Gaps = 1/49 (2%)
Frame = +3
Query: 216 CRTAARITANSRTPRCSERTEGI-SLTVFETFLPLSPVGLLLQQLPDEQ 359
CR T + + +CSE+T + VFE F+P+ + L +++ +E+
Sbjct: 49 CRKELSGTTTTTSEQCSEQTTSVCGGPVFEEFIPIKKISSLCEEVQEEE 97
>At4g31450.1 68417.m04469 zinc finger (C3HC4-type RING finger)
family protein similar to Pfam domain, PF00097: Zinc
finger, C3HC4 type (RING finger)
Length = 497
Score = 29.9 bits (64), Expect = 1.4
Identities = 20/61 (32%), Positives = 31/61 (50%)
Frame = +3
Query: 417 GLIKHVTKRGGKMDFSSHTTLKGDKGSNYTVRSATRSEPWPKPWTRRSSLPRGFSSSTGK 596
GL K +++ K D S T + G+ S+ + R +EP P RRS PRG S + +
Sbjct: 199 GLDKRLSR---KADTISKTKVYGESSSSSSARGKNVTEPPPVEVRRRSFNPRGSVSDSRR 255
Query: 597 S 599
+
Sbjct: 256 A 256
>At3g62110.1 68416.m06978 glycoside hydrolase family 28 protein /
polygalacturonase (pectinase) family protein weak
similarity to polygalacturonase [Lycopersicon
esculentum] GI:4325090; contains PF00295: Glycosyl
hydrolases family 28
Length = 471
Score = 29.9 bits (64), Expect = 1.4
Identities = 15/31 (48%), Positives = 18/31 (58%)
Frame = +3
Query: 447 GKMDFSSHTTLKGDKGSNYTVRSATRSEPWP 539
G D SH TL DKG+ T+ +T SE WP
Sbjct: 90 GSFDLISHLTLWLDKGA--TILGSTSSENWP 118
>At5g02620.1 68418.m00198 ankyrin repeat family protein contains
ankyrin repeat domains, Pfam:PF00023
Length = 524
Score = 29.1 bits (62), Expect = 2.5
Identities = 13/22 (59%), Positives = 15/22 (68%)
Frame = +1
Query: 517 PRDRSPGQSLGHAEAACREDFL 582
P+D PG SLG A AA R +FL
Sbjct: 379 PKDVPPGYSLGEARAAPRPEFL 400
>At2g20860.1 68415.m02458 lipoic acid synthase (LIP1) identical to
gi:3928758 contains Pfam profile PF04055: radical SAM
domain protein
Length = 374
Score = 28.7 bits (61), Expect = 3.3
Identities = 11/28 (39%), Positives = 16/28 (57%)
Frame = +3
Query: 492 GSNYTVRSATRSEPWPKPWTRRSSLPRG 575
G Y+V T+ +P PKP + S+P G
Sbjct: 57 GDTYSVEVGTKKKPLPKPKWMKESIPGG 84
>At4g09630.1 68417.m01583 expressed protein contains Pfam profile:
PF04765 protein of unknown function (DUF616)
Length = 711
Score = 27.9 bits (59), Expect = 5.8
Identities = 18/57 (31%), Positives = 24/57 (42%)
Frame = +2
Query: 407 ENHWSHKARH*EGWEDGLLESHHTERRQGQQLHREVGHEIGALAKALDTQKQLAERI 577
EN SHK H EDG ESH R + E E ++ T+ Q E++
Sbjct: 256 ENEESHKDNHKHN-EDGAEESHKDSHRHNEDGAEESHKETASVFLHSTTKHQKIEKV 311
>At1g79430.2 68414.m09257 myb family transcription factor-related
Length = 358
Score = 27.9 bits (59), Expect = 5.8
Identities = 17/51 (33%), Positives = 28/51 (54%), Gaps = 3/51 (5%)
Frame = +2
Query: 461 LESHHTERRQGQQLHREVG-HEI--GALAKALDTQKQLAERIFFIHREVTK 604
L+SH + R G+Q H+E G H G+ A A+D Q+ +A + R + +
Sbjct: 79 LKSHLQKFRLGKQPHKEYGDHSTKEGSRASAMDIQRNVASSSGMMSRNMNE 129
>At1g79430.1 68414.m09256 myb family transcription factor-related
Length = 293
Score = 27.9 bits (59), Expect = 5.8
Identities = 17/51 (33%), Positives = 28/51 (54%), Gaps = 3/51 (5%)
Frame = +2
Query: 461 LESHHTERRQGQQLHREVG-HEI--GALAKALDTQKQLAERIFFIHREVTK 604
L+SH + R G+Q H+E G H G+ A A+D Q+ +A + R + +
Sbjct: 14 LKSHLQKFRLGKQPHKEYGDHSTKEGSRASAMDIQRNVASSSGMMSRNMNE 64
>At5g39590.1 68418.m04795 expressed protein
Length = 542
Score = 27.5 bits (58), Expect = 7.7
Identities = 16/61 (26%), Positives = 26/61 (42%)
Frame = +3
Query: 123 LSSLPVWLWVCWPRKTHAIRTSTKDADGL*VCRTAARITANSRTPRCSERTEGISLTVFE 302
+S L V+LW+CW + + G + + S C++ G SL V+E
Sbjct: 156 VSELLVFLWMCWTMSWDGRSSKAAEMKGCLFLPDISHLIL-SAVVSCTDSESGNSLDVWE 214
Query: 303 T 305
T
Sbjct: 215 T 215
>At3g45830.1 68416.m04960 expressed protein
Length = 1298
Score = 27.5 bits (58), Expect = 7.7
Identities = 11/31 (35%), Positives = 18/31 (58%)
Frame = +3
Query: 465 SHTTLKGDKGSNYTVRSATRSEPWPKPWTRR 557
S TL +K ++ S+ + EP+ KPW R+
Sbjct: 218 SQKTLMREKKDDFEDDSSEKDEPFDKPWGRK 248
>At2g31960.1 68415.m03905 glycosyl transferase family 48 protein
contains Pfam profile: PF02364 1,3-beta-glucan synthase;
contains non-consensus splice aite AC at exon 33
Length = 1959
Score = 27.5 bits (58), Expect = 7.7
Identities = 14/41 (34%), Positives = 22/41 (53%)
Frame = +3
Query: 282 ISLTVFETFLPLSPVGLLLQQLPDEQGRIRELFRKLSDDSW 404
+ L + FL S + + L D G+ REL ++LS DS+
Sbjct: 856 LDLIRWPPFLLASKIPIALDMAKDSNGKDRELTKRLSVDSY 896
>At2g26660.1 68415.m03198 SPX (SYG1/Pho81/XPR1) domain-containing
protein low similarity to NUC-2 [Neurospora crassa]
GI:1399532, xenotropic and polytropic murine leukemia
virus receptor [Mus musculus castaneus] GI:6093320;
contains Pfam profile PF03105: SPX domain
Length = 287
Score = 27.5 bits (58), Expect = 7.7
Identities = 9/18 (50%), Positives = 14/18 (77%)
Frame = +3
Query: 387 LSDDSWEKTIGLIKHVTK 440
L DDSW+K +G+++ V K
Sbjct: 270 LEDDSWKKKVGVLEQVAK 287
>At1g66450.1 68414.m07549 DC1 domain-containing protein contains
Pfam profile PF03107: DC1 domain
Length = 700
Score = 27.5 bits (58), Expect = 7.7
Identities = 15/50 (30%), Positives = 21/50 (42%)
Frame = -2
Query: 618 RRSLFLVTSLWMKKILSASCFCVSKALARAPISWPTSRCSCCPCRLSVWC 469
R SL LV W+ C+C + L W CS C C +++ C
Sbjct: 208 RHSLQLVL-WWVSNFQKRKCYCCDEELL-----WIFYFCSACDCGMNIAC 251
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,182,379
Number of Sequences: 28952
Number of extensions: 298898
Number of successful extensions: 963
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 942
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 963
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1275599520
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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