Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30687
         (614 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC13G6.02c |rps101|rps1-1, rps3a-1|40S ribosomal protein S3a|S...    94   2e-20
SPAC22H12.04c |rps102|rps1-2, rps3a-2|40S ribosomal protein S3a|...    93   3e-20
SPBP8B7.19 |spt16||FACT complex component Spt16|Schizosaccharomy...    28   0.93 
SPBC1826.01c |mot1||TATA-binding protein associated factor Mot1|...    28   1.2  
SPBC106.14c |sda1||SDA1 family protein|Schizosaccharomyces pombe...    28   1.2  
SPAC14C4.12c |||SWIRM domain protein|Schizosaccharomyces pombe|c...    27   2.2  
SPBC337.13c |gtr1||Gtr1/RagA G protein Gtr1|Schizosaccharomyces ...    27   2.8  
SPBC21C3.15c |||aldehyde dehydrogenase |Schizosaccharomyces pomb...    27   2.8  
SPCC24B10.11c |||THO complex subunit 7 |Schizosaccharomyces pomb...    27   2.8  
SPAC664.08c |||traub transciption factor family protein |Schizos...    25   6.6  
SPBC1921.05 |ape2||aminopeptidase Ape2|Schizosaccharomyces pombe...    25   8.7  
SPCC417.08 |tef3||translation elongation factor eEF3|Schizosacch...    25   8.7  
SPAC1805.14 |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    25   8.7  

>SPAC13G6.02c |rps101|rps1-1, rps3a-1|40S ribosomal protein
           S3a|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 252

 Score = 93.9 bits (223), Expect = 2e-20
 Identities = 46/87 (52%), Positives = 64/87 (73%)
 Frame = +2

Query: 2   ADLQADTDAERSFRKFRLIAEYVQGRNVLCNFHGMDLTTDKLRWMVKKWQTLIEANIDVK 181
           ADLQ D   E SFRK +L  E +QG++ L +F+G D+T+DKLR +V+KWQ+ IEAN  +K
Sbjct: 71  ADLQKDE--EHSFRKVKLRVEDIQGKSCLTSFNGFDMTSDKLRSLVRKWQSTIEANQTIK 128

Query: 182 TTDGYVLRVFCIGFTNKDSLSQRKSAT 262
           TTDGY+ R+F IGFT++  ++Q K  T
Sbjct: 129 TTDGYLCRIFVIGFTSR-RVNQVKKTT 154



 Score = 91.1 bits (216), Expect = 1e-19
 Identities = 40/80 (50%), Positives = 58/80 (72%)
 Frame = +1

Query: 259 YAQHTQVRAIRKKMCEIITRDVTNSELREVVNKLIPDSIAKDIEKACHGIYPLRDVCIRK 438
           YAQ +Q+RAI +KM ++I        ++E+V KLIP+ I + IEKA + IYPL++V +RK
Sbjct: 155 YAQSSQIRAIHQKMFQVIQNQANGCSMKELVQKLIPEVIGRAIEKATNNIYPLQNVFVRK 214

Query: 439 VKVLKRPRFEISKLMELHGE 498
           VK+LK P+ +  KL+ELHGE
Sbjct: 215 VKILKAPKHDAQKLLELHGE 234


>SPAC22H12.04c |rps102|rps1-2, rps3a-2|40S ribosomal protein
           S3a|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 252

 Score = 93.1 bits (221), Expect = 3e-20
 Identities = 40/80 (50%), Positives = 61/80 (76%)
 Frame = +1

Query: 259 YAQHTQVRAIRKKMCEIITRDVTNSELREVVNKLIPDSIAKDIEKACHGIYPLRDVCIRK 438
           YAQ +Q+RAIR+KM ++I    ++  +RE+V KLIP+ I ++IE+A   I+PL++V +RK
Sbjct: 155 YAQSSQIRAIRQKMFQVIQNQTSSCSMRELVQKLIPEVIGREIERATGSIFPLQNVLVRK 214

Query: 439 VKVLKRPRFEISKLMELHGE 498
           VK+LK P+ +  KL+ELHGE
Sbjct: 215 VKILKAPKHDAQKLLELHGE 234



 Score = 90.6 bits (215), Expect = 2e-19
 Identities = 43/85 (50%), Positives = 62/85 (72%)
 Frame = +2

Query: 2   ADLQADTDAERSFRKFRLIAEYVQGRNVLCNFHGMDLTTDKLRWMVKKWQTLIEANIDVK 181
           ADLQ D   E +FRK +L  E +QG++ L +F+G+ +T+DKLR +V+KWQT IEA+  +K
Sbjct: 71  ADLQKDE--EHAFRKVKLRVEDIQGKSCLTSFNGLSITSDKLRSLVRKWQTTIEADQTIK 128

Query: 182 TTDGYVLRVFCIGFTNKDSLSQRKS 256
           TTDGY+ RVF IGFT + +   +K+
Sbjct: 129 TTDGYLCRVFVIGFTRRRANQVKKT 153


>SPBP8B7.19 |spt16||FACT complex component Spt16|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1019

 Score = 28.3 bits (60), Expect = 0.93
 Identities = 19/86 (22%), Positives = 35/86 (40%), Gaps = 1/86 (1%)
 Frame = +2

Query: 8   LQADTDAERSFRKFRLIAEYVQGRNVLCNFHGMDLTTDKLRWMVKKWQTLIE-ANIDVKT 184
           L+   DAE + + F  I EY++  N        D T  K    + +W ++ E    +   
Sbjct: 106 LKRTKDAEENKKLFEKIIEYIRATNKKVGVFPKDKTQGK---FINEWDSIFEPVKSEFNL 162

Query: 185 TDGYVLRVFCIGFTNKDSLSQRKSAT 262
            D  +    C+   ++  L+  K A+
Sbjct: 163 VDASLGLAKCLAIKDEQELANIKGAS 188


>SPBC1826.01c |mot1||TATA-binding protein associated factor
           Mot1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1953

 Score = 27.9 bits (59), Expect = 1.2
 Identities = 14/24 (58%), Positives = 15/24 (62%)
 Frame = -2

Query: 484 PSTSRSRNGASSTLSPFGCKHRAE 413
           PSTSR RN   S LS    KHRA+
Sbjct: 736 PSTSRERNNNISELSNSRTKHRAK 759


>SPBC106.14c |sda1||SDA1 family protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 719

 Score = 27.9 bits (59), Expect = 1.2
 Identities = 11/44 (25%), Positives = 23/44 (52%)
 Frame = +1

Query: 304 EIITRDVTNSELREVVNKLIPDSIAKDIEKACHGIYPLRDVCIR 435
           E +  D     +R++ ++ +   +A ++   C GI  +R+VC R
Sbjct: 387 EFVPPDALEPLVRKIADEFVTSGVANEV--VCAGINAIREVCAR 428


>SPAC14C4.12c |||SWIRM domain protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 297

 Score = 27.1 bits (57), Expect = 2.2
 Identities = 11/30 (36%), Positives = 17/30 (56%)
 Frame = +1

Query: 451 KRPRFEISKLMELHGEGGGARGKPETSLNG 540
           KRPR + S  +++H      RG P+T  +G
Sbjct: 114 KRPRRQPSSFLDVHASNTRKRGSPDTPDSG 143


>SPBC337.13c |gtr1||Gtr1/RagA G protein Gtr1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 308

 Score = 26.6 bits (56), Expect = 2.8
 Identities = 17/46 (36%), Positives = 26/46 (56%), Gaps = 2/46 (4%)
 Frame = +2

Query: 56  IAEYVQGRNVLCNFHGMDLTTDKLRWMV--KKWQTLIEANIDVKTT 187
           +A   Q R V C  H MDL  + LR +V  ++   L+E + D++TT
Sbjct: 109 VANSPQAR-VFCLIHKMDLVQEDLRDLVFEERKAILLETSKDLETT 153


>SPBC21C3.15c |||aldehyde dehydrogenase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 522

 Score = 26.6 bits (56), Expect = 2.8
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = -2

Query: 151 LPFFNHPPELIGCEVHAVEVAEHITS 74
           L    H PEL+ C     +VA+H+TS
Sbjct: 181 LQSMGHSPELVQCITCLPDVADHLTS 206


>SPCC24B10.11c |||THO complex subunit 7 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 202

 Score = 26.6 bits (56), Expect = 2.8
 Identities = 11/30 (36%), Positives = 19/30 (63%)
 Frame = +3

Query: 417 ARCLHPKGESVEEAPFRDLEVDGTSRRRRW 506
           +RCL    ++V+EA  RDLE++ ++    W
Sbjct: 22  SRCLGFAAQNVDEANLRDLEIEFSALSAFW 51


>SPAC664.08c |||traub transciption factor family protein
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 452

 Score = 25.4 bits (53), Expect = 6.6
 Identities = 13/34 (38%), Positives = 18/34 (52%), Gaps = 1/34 (2%)
 Frame = +2

Query: 107 DLTTD-KLRWMVKKWQTLIEANIDVKTTDGYVLR 205
           D T D  +RWM  K Q   + N+D K + G  +R
Sbjct: 351 DSTRDGTVRWMATKKQKQKKENVDTKASKGRKIR 384


>SPBC1921.05 |ape2||aminopeptidase Ape2|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 882

 Score = 25.0 bits (52), Expect = 8.7
 Identities = 16/68 (23%), Positives = 31/68 (45%), Gaps = 2/68 (2%)
 Frame = +2

Query: 128 RWMVKKWQTLIEANIDVKTTDGYVLRVFCIGFTNKDSLSQRKS--ATPSTLRSEQSERKC 301
           ++    W  L+       T  GYV+R    GFT+  ++ + K   A   T   E++ ++ 
Sbjct: 795 KFATSNWDKLLSRLPVAGTMRGYVVRFVTSGFTHASAIDKIKEFFADKDTKLYERALQQS 854

Query: 302 VKSLHATS 325
           + ++ A S
Sbjct: 855 LDTISANS 862


>SPCC417.08 |tef3||translation elongation factor
           eEF3|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1047

 Score = 25.0 bits (52), Expect = 8.7
 Identities = 12/20 (60%), Positives = 12/20 (60%)
 Frame = -2

Query: 130 PELIGCEVHAVEVAEHITSL 71
           PELI C  H  EV E I SL
Sbjct: 216 PELINCIAHPEEVPETIHSL 235


>SPAC1805.14 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 452

 Score = 25.0 bits (52), Expect = 8.7
 Identities = 20/73 (27%), Positives = 30/73 (41%), Gaps = 2/73 (2%)
 Frame = -3

Query: 483 HQLRDL-ETGPLQHFHLSDANIAQRV-DAMAGLLDVLGNGVRNQLVHHLPEFRVSDVACN 310
           H   DL E     H H    +    V +A      V GNG++N L+H+  E   +D +  
Sbjct: 265 HHFCDLSEISKFNHQHSGKPDHPSLVSNASLAPFIVEGNGIKNGLLHYNMETAETDESYT 324

Query: 309 DFTHFLSDCSDLS 271
           D     +   +LS
Sbjct: 325 DLDDTFARLKNLS 337


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,473,331
Number of Sequences: 5004
Number of extensions: 52026
Number of successful extensions: 167
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 156
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 167
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 269634532
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)