Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV30687
(614 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_02_0043 + 5242496-5242554,5242673-5242778,5243586-5243723,524... 116 1e-26
02_02_0482 - 10819562-10819813,10820773-10820952,10822073-108221... 114 5e-26
12_02_0012 - 12309332-12310228,12311087-12311669,12311945-123120... 113 8e-26
11_05_0007 - 18324969-18325063,18326580-18326745,18327078-183272... 31 0.55
11_01_0558 - 4396750-4396986,4397699-4398050,4398266-4398504,439... 30 1.3
05_06_0094 + 25477367-25477398,25477516-25477891,25478292-254783... 29 2.2
01_05_0316 + 20813347-20813636,20816017-20816095,20816160-20816333 29 3.9
09_02_0094 + 4196729-4197571 28 5.1
06_03_0290 - 19193707-19193752,19193822-19194090 28 5.1
04_01_0253 - 3358090-3359052 28 5.1
03_05_0019 + 19862171-19863049 28 6.8
10_07_0125 - 13096520-13097200,13098209-13098898 27 8.9
07_03_1709 - 28873172-28873327,28873519-28873584,28874067-288741... 27 8.9
01_01_0829 + 6471032-6471870,6472490-6472685,6472772-6472956,647... 27 8.9
>03_02_0043 +
5242496-5242554,5242673-5242778,5243586-5243723,
5243794-5243979,5244075-5244275,5244362-5244460
Length = 262
Score = 116 bits (279), Expect = 1e-26
Identities = 58/102 (56%), Positives = 73/102 (71%)
Frame = +2
Query: 2 ADLQADTDAERSFRKFRLIAEYVQGRNVLCNFHGMDLTTDKLRWMVKKWQTLIEANIDVK 181
ADLQ D D +++RK RL AE VQG+NVL NF GM TTDKLR +VKKWQTLIEA++DVK
Sbjct: 71 ADLQNDED--QAYRKIRLRAEDVQGKNVLTNFWGMSFTTDKLRSLVKKWQTLIEAHVDVK 128
Query: 182 TTDGYVLRVFCIGFTNKDSLSQRKSATPSTLRSEQSERKCVK 307
TTDGY+LR+FCIGFT + +++ + Q RK V+
Sbjct: 129 TTDGYMLRLFCIGFTKRRPNQVKRTCYAQASQIRQIRRKMVE 170
Score = 100 bits (239), Expect = 1e-21
Identities = 42/81 (51%), Positives = 64/81 (79%)
Frame = +1
Query: 256 CYAQHTQVRAIRKKMCEIITRDVTNSELREVVNKLIPDSIAKDIEKACHGIYPLRDVCIR 435
CYAQ +Q+R IR+KM EI+ ++ +L+E+V+K IP+ I K+IEKA I+PL++V +R
Sbjct: 154 CYAQASQIRQIRRKMVEIMANQASSCDLKELVSKFIPEVIGKEIEKATSSIFPLQNVFVR 213
Query: 436 KVKVLKRPRFEISKLMELHGE 498
KVK+LK P+F++ KLME+HG+
Sbjct: 214 KVKILKAPKFDLGKLMEVHGD 234
>02_02_0482 -
10819562-10819813,10820773-10820952,10822073-10822150,
10823056-10823256,10823365-10823550,10823646-10823783,
10824396-10824501,10824634-10824692
Length = 399
Score = 114 bits (275), Expect = 5e-26
Identities = 58/102 (56%), Positives = 72/102 (70%)
Frame = +2
Query: 2 ADLQADTDAERSFRKFRLIAEYVQGRNVLCNFHGMDLTTDKLRWMVKKWQTLIEANIDVK 181
ADLQ D D +++RK RL AE VQGRNVL NF GM TTDKLR +VKKWQTLIEA++DVK
Sbjct: 71 ADLQNDED--QAYRKVRLRAEDVQGRNVLTNFWGMSFTTDKLRSLVKKWQTLIEAHVDVK 128
Query: 182 TTDGYVLRVFCIGFTNKDSLSQRKSATPSTLRSEQSERKCVK 307
TTD Y+LR+FCIGFT + +++ + Q RK V+
Sbjct: 129 TTDNYMLRLFCIGFTKRRPNQVKRTCYAQASQIRQIRRKMVE 170
Score = 99.1 bits (236), Expect = 2e-21
Identities = 42/81 (51%), Positives = 63/81 (77%)
Frame = +1
Query: 256 CYAQHTQVRAIRKKMCEIITRDVTNSELREVVNKLIPDSIAKDIEKACHGIYPLRDVCIR 435
CYAQ +Q+R IR+KM EI+ + +L+E+V+K IP+ I K+IEK+ I+PL++V IR
Sbjct: 154 CYAQASQIRQIRRKMVEIMANQASTCDLKELVSKFIPEVIGKEIEKSTSSIFPLQNVFIR 213
Query: 436 KVKVLKRPRFEISKLMELHGE 498
KVK+LK P+F++ KLME+HG+
Sbjct: 214 KVKILKAPKFDLGKLMEVHGD 234
>12_02_0012 -
12309332-12310228,12311087-12311669,12311945-12312051,
12313190-12313237,12315139-12315216,12315300-12315500,
12315612-12315797,12315870-12316007,12318311-12318416,
12318529-12318587
Length = 800
Score = 113 bits (273), Expect = 8e-26
Identities = 57/102 (55%), Positives = 72/102 (70%)
Frame = +2
Query: 2 ADLQADTDAERSFRKFRLIAEYVQGRNVLCNFHGMDLTTDKLRWMVKKWQTLIEANIDVK 181
ADLQ D D +++RK RL AE VQG+NVL NF GM TTDKLR +VKKWQTLIEA++DVK
Sbjct: 71 ADLQNDED--QAYRKIRLRAEDVQGKNVLTNFWGMSFTTDKLRSLVKKWQTLIEAHVDVK 128
Query: 182 TTDGYVLRVFCIGFTNKDSLSQRKSATPSTLRSEQSERKCVK 307
TTD Y+LR+FCIGFT + +++ + Q RK V+
Sbjct: 129 TTDNYMLRLFCIGFTKRRPNQVKRTCYAQASQIRQIRRKMVE 170
Score = 100 bits (239), Expect = 1e-21
Identities = 42/81 (51%), Positives = 64/81 (79%)
Frame = +1
Query: 256 CYAQHTQVRAIRKKMCEIITRDVTNSELREVVNKLIPDSIAKDIEKACHGIYPLRDVCIR 435
CYAQ +Q+R IR+KM EI+ ++ +L+E+V+K IP+ I K+IEKA I+PL++V +R
Sbjct: 154 CYAQASQIRQIRRKMVEIMVNQASSCDLKELVSKFIPEVIGKEIEKATSSIFPLQNVFVR 213
Query: 436 KVKVLKRPRFEISKLMELHGE 498
KVK+LK P+F++ KLME+HG+
Sbjct: 214 KVKILKAPKFDLGKLMEVHGD 234
>11_05_0007 -
18324969-18325063,18326580-18326745,18327078-18327275,
18327377-18327643,18328070-18328129,18328767-18329033,
18329156-18329359,18329441-18331496,18332517-18333358
Length = 1384
Score = 31.5 bits (68), Expect = 0.55
Identities = 30/136 (22%), Positives = 59/136 (43%), Gaps = 1/136 (0%)
Frame = -3
Query: 492 VKFHQLRDLETGPLQHFHLSDANIAQRVDAMAGLLDVLGNGVRN-QLVHHLPEFRVSDVA 316
++F Q D++ ++ S ++ Q + M L NG+ N + + HL S++
Sbjct: 625 LRFLQTLDIKQTRIKELPSSVVHLTQLMRLMVDTWTKLPNGIGNMECLEHL-----SEID 679
Query: 315 CNDFTHFLSDCSDLSVLGVALLRWLKESLLVKPMQKTRRTYPSVVFTSMLASMRVCHFLT 136
+ + + + SDL L V LL+ +K++ P + S + + H
Sbjct: 680 TSMYPSLMKELSDLPKLRVL-------ELLLSTWEKSKEK-PFLDCFSCMKKLESLHIFA 731
Query: 135 IHLSLSVVRSMPWKLQ 88
H+SL + ++ W LQ
Sbjct: 732 PHISLDFMLNVDWTLQ 747
>11_01_0558 -
4396750-4396986,4397699-4398050,4398266-4398504,
4398608-4398709
Length = 309
Score = 30.3 bits (65), Expect = 1.3
Identities = 15/53 (28%), Positives = 30/53 (56%)
Frame = +1
Query: 343 EVVNKLIPDSIAKDIEKACHGIYPLRDVCIRKVKVLKRPRFEISKLMELHGEG 501
++VN IPD + + ++K C IY LR+ ++ + +++L++ GEG
Sbjct: 34 QLVNTGIPDDLLERVKKVCSDIYKLREDGFKESNPAVK---ALARLVDQEGEG 83
>05_06_0094 +
25477367-25477398,25477516-25477891,25478292-25478315,
25479069-25481828
Length = 1063
Score = 29.5 bits (63), Expect = 2.2
Identities = 17/38 (44%), Positives = 18/38 (47%)
Frame = -2
Query: 517 SPLLHRLRREVPSTSRSRNGASSTLSPFGCKHRAEGRC 404
S L H R E PST R+ NG S F AE RC
Sbjct: 687 SQLFHGTRVEPPSTLRNSNGGVEHPSRFSSVPEAELRC 724
>01_05_0316 + 20813347-20813636,20816017-20816095,20816160-20816333
Length = 180
Score = 28.7 bits (61), Expect = 3.9
Identities = 17/57 (29%), Positives = 28/57 (49%), Gaps = 3/57 (5%)
Frame = +3
Query: 411 PSARCLHPKGESVEEA---PFRDLEVDGTSRRRRWSKGEAGDKSERPEGYEPPVQES 572
P ARC + G + PF G + RRW +G+ GD+ ++ + P+QE+
Sbjct: 55 PEARCSYDGGHRRPPSSLQPFPPFFGSGEATGRRWQRGKMGDRRQQLQC--APLQEA 109
>09_02_0094 + 4196729-4197571
Length = 280
Score = 28.3 bits (60), Expect = 5.1
Identities = 22/85 (25%), Positives = 37/85 (43%)
Frame = -3
Query: 306 FTHFLSDCSDLSVLGVALLRWLKESLLVKPMQKTRRTYPSVVFTSMLASMRVCHFLTIHL 127
FT FL CS L++ KES L +P Y +VF + + F+ +
Sbjct: 139 FTMFLEGCSPFGPFWDHYLQYWKES-LKRPRDVLFLRYEEIVFDPLKVVRDLAGFIGVPF 197
Query: 126 SLSVVRSMPWKLQSTLRPCTYSAIN 52
+ V+S Q +R C++ A++
Sbjct: 198 TEEEVKS--GVDQEVVRLCSFKALS 220
>06_03_0290 - 19193707-19193752,19193822-19194090
Length = 104
Score = 28.3 bits (60), Expect = 5.1
Identities = 12/30 (40%), Positives = 17/30 (56%)
Frame = +3
Query: 87 SATSTAWTSQPISSGGWLKNGRLSSKPTLM 176
+A S A T P S GW+ G S+ P+L+
Sbjct: 67 AAGSAARTRSPSQSNGWITGGSASAMPSLV 96
>04_01_0253 - 3358090-3359052
Length = 320
Score = 28.3 bits (60), Expect = 5.1
Identities = 15/40 (37%), Positives = 20/40 (50%)
Frame = -2
Query: 502 RLRREVPSTSRSRNGASSTLSPFGCKHRAEGRCHGRPSRC 383
R RR +TSR+ +G +T + G R GRP RC
Sbjct: 67 RRRRRRETTSRATDGTMTTTTNTGGVRSKGRRGRGRPCRC 106
>03_05_0019 + 19862171-19863049
Length = 292
Score = 27.9 bits (59), Expect = 6.8
Identities = 13/53 (24%), Positives = 23/53 (43%)
Frame = +1
Query: 205 CLLHWFHQ*GLLEPTQECYAQHTQVRAIRKKMCEIITRDVTNSELREVVNKLI 363
C W+ GL +P + H V+ +K+C ++ D S + KL+
Sbjct: 72 CGPDWYAMLGLPQPRSDLVTHHDAVKKQYRKLCLLVHPDKNTSAAADGAFKLV 124
>10_07_0125 - 13096520-13097200,13098209-13098898
Length = 456
Score = 27.5 bits (58), Expect = 8.9
Identities = 14/41 (34%), Positives = 19/41 (46%)
Frame = +1
Query: 454 RPRFEISKLMELHGEGGGARGKPETSLNGRRATSLPFKRVF 576
R R S + HG+GGG R P + + P +RVF
Sbjct: 10 RTRSVTSVALPTHGDGGGCRRVPLSPFDAYWVALPPVRRVF 50
>07_03_1709 -
28873172-28873327,28873519-28873584,28874067-28874127,
28875406-28875462,28876301-28876531,28876685-28876799,
28876897-28877136,28877222-28877316,28877406-28877585,
28877663-28877839,28877920-28878890
Length = 782
Score = 27.5 bits (58), Expect = 8.9
Identities = 15/39 (38%), Positives = 20/39 (51%)
Frame = -2
Query: 457 ASSTLSPFGCKHRAEGRCHGRPSRCPWQWSQESTCSPPP 341
A++ SPF + GRC PS P S S+ +PPP
Sbjct: 79 AAAAHSPFMLSRQNSGRCGTAPS--PLSVSSPSSWAPPP 115
>01_01_0829 +
6471032-6471870,6472490-6472685,6472772-6472956,
6473206-6473539,6473629-6473833,6474927-6475033,
6475117-6475269
Length = 672
Score = 27.5 bits (58), Expect = 8.9
Identities = 14/30 (46%), Positives = 20/30 (66%)
Frame = -2
Query: 529 LSPASPLLHRLRREVPSTSRSRNGASSTLS 440
LSP SPL H ++P+ S S +G+S +LS
Sbjct: 37 LSPVSPLTHSSSSKLPTPS-SSSGSSGSLS 65
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,641,499
Number of Sequences: 37544
Number of extensions: 400178
Number of successful extensions: 1654
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1558
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1654
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1478421500
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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