Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30687
         (614 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_37698| Best HMM Match : Ribosomal_S3Ae (HMM E-Value=5e-21)         130   7e-31
SB_17046| Best HMM Match : No HMM Matches (HMM E-Value=.)              32   0.42 
SB_35734| Best HMM Match : Extensin_2 (HMM E-Value=0.52)               31   0.56 
SB_12670| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.3  
SB_47600| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.7  
SB_37029| Best HMM Match : 7tm_1 (HMM E-Value=4.2039e-45)              29   3.0  
SB_29263| Best HMM Match : 7tm_1 (HMM E-Value=8.4e-16)                 29   4.0  
SB_10624| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.2  
SB_296| Best HMM Match : 7tm_1 (HMM E-Value=2.5e-07)                   28   6.9  
SB_19503| Best HMM Match : Kinesin (HMM E-Value=9.5e-14)               28   6.9  
SB_57495| Best HMM Match : G_glu_transpept (HMM E-Value=0)             27   9.1  
SB_29265| Best HMM Match : OmpH (HMM E-Value=3)                        27   9.1  
SB_9937| Best HMM Match : Fer2 (HMM E-Value=6.9)                       27   9.1  
SB_7895| Best HMM Match : uDENN (HMM E-Value=5.7e-25)                  27   9.1  

>SB_37698| Best HMM Match : Ribosomal_S3Ae (HMM E-Value=5e-21)
          Length = 147

 Score =  130 bits (315), Expect = 7e-31
 Identities = 60/96 (62%), Positives = 75/96 (78%)
 Frame = +1

Query: 259 YAQHTQVRAIRKKMCEIITRDVTNSELREVVNKLIPDSIAKDIEKACHGIYPLRDVCIRK 438
           YA+HTQ++AIRKKM +IITR+V+ ++L+EVVNKLIPDSI KDIEK+C  IYPL DV IRK
Sbjct: 38  YAKHTQIKAIRKKMVDIITREVSTNDLKEVVNKLIPDSIGKDIEKSCQSIYPLHDVHIRK 97

Query: 439 VKVLKRPRFEISKLMELHGEGGGARGKPETSLNGRR 546
           VKVLK+P+F+I KLME+HGE         T   G +
Sbjct: 98  VKVLKKPKFDIGKLMEMHGEASSHATTTTTDETGTK 133



 Score = 52.8 bits (121), Expect = 2e-07
 Identities = 25/51 (49%), Positives = 34/51 (66%)
 Frame = +2

Query: 152 TLIEANIDVKTTDGYVLRVFCIGFTNKDSLSQRKSATPSTLRSEQSERKCV 304
           TLIEA +DVKTTDGY+LR+FCIGFT +     +K+A     + +   +K V
Sbjct: 2   TLIEAAVDVKTTDGYLLRMFCIGFTKRRQNQIKKTAYAKHTQIKAIRKKMV 52



 Score = 27.9 bits (59), Expect = 6.9
 Identities = 12/36 (33%), Positives = 22/36 (61%)
 Frame = +3

Query: 468 DLEVDGTSRRRRWSKGEAGDKSERPEGYEPPVQESV 575
           ++  + +S     +  E G K +R EG+EPP+Q++V
Sbjct: 113 EMHGEASSHATTTTTDETGTKIDR-EGFEPPIQDTV 147


>SB_17046| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 343

 Score = 31.9 bits (69), Expect = 0.42
 Identities = 32/110 (29%), Positives = 50/110 (45%), Gaps = 2/110 (1%)
 Frame = -3

Query: 342 PEFRVSDVACNDFTH-FLSDCSDL-SVLGVALLRWLKESLLVKPMQKTRRTYPSVVFTSM 169
           P  R  D  C  FTH  +   S L S+  + ++   +   LVKPMQ  RR     V+ ++
Sbjct: 85  PTGRSGDWICKFFTHNAIMQISVLTSIFTLTIVSVERYHALVKPMQVGRRLTEDTVWYAV 144

Query: 168 LASMRVCHFLTIHLSLSVVRSMPWKLQSTLRPCTYSAINLNLRKDLSASV 19
           +AS       T  L L+V   +  K   T + CT    + + +++LS  V
Sbjct: 145 IASW------TASLILTVPSFVAIKFDETRKACT-GPFDFHTQENLSYMV 187


>SB_35734| Best HMM Match : Extensin_2 (HMM E-Value=0.52)
          Length = 460

 Score = 31.5 bits (68), Expect = 0.56
 Identities = 17/54 (31%), Positives = 28/54 (51%), Gaps = 1/54 (1%)
 Frame = +3

Query: 402 WHLPSARCLHPKGES-VEEAPFRDLEVDGTSRRRRWSKGEAGDKSERPEGYEPP 560
           W++  A+   P  +S     PF+D     +   ++W+  +A  KS +PEGY PP
Sbjct: 311 WNVGPAQSARPPVQSFASNQPFQD-STTHSDTYKKWAV-QAVPKSTKPEGYRPP 362


>SB_12670| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1272

 Score = 30.3 bits (65), Expect = 1.3
 Identities = 14/41 (34%), Positives = 19/41 (46%)
 Frame = +3

Query: 444 SVEEAPFRDLEVDGTSRRRRWSKGEAGDKSERPEGYEPPVQ 566
           S+E        V    R+R+W  GE+   SER E    PV+
Sbjct: 184 SLEPGELSSSPVTSRRRKRQWRSGESSTSSEREESAHRPVK 224


>SB_47600| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 762

 Score = 29.9 bits (64), Expect = 1.7
 Identities = 14/43 (32%), Positives = 26/43 (60%)
 Frame = +2

Query: 170 IDVKTTDGYVLRVFCIGFTNKDSLSQRKSATPSTLRSEQSERK 298
           +DV+  D Y  R + +  T+ D +++R SA+P  + S+  +RK
Sbjct: 518 LDVEVDDLYSGRKYRLNETSTDHVTRRSSASPEKIVSKTRDRK 560


>SB_37029| Best HMM Match : 7tm_1 (HMM E-Value=4.2039e-45)
          Length = 1102

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 15/57 (26%), Positives = 32/57 (56%), Gaps = 2/57 (3%)
 Frame = -3

Query: 171  MLASMRVCHFLTIHLSLSVVRSMPWKLQSTLRPCTYSAINLNLRKDLSA--SVSACR 7
            ++ SM +C ++ + +SL   R +   +  +L PC Y  ++++L + +    S+S CR
Sbjct: 948  VVMSMSLCRYVHVVMSLCPCRYVHVVMSMSLCPCRYVVMSMSLCRYIHVVMSMSLCR 1004


>SB_29263| Best HMM Match : 7tm_1 (HMM E-Value=8.4e-16)
          Length = 491

 Score = 28.7 bits (61), Expect = 4.0
 Identities = 22/71 (30%), Positives = 36/71 (50%), Gaps = 2/71 (2%)
 Frame = -3

Query: 327 SDVACNDFTHFLSDCSDLSVLGVALLRWLKESLLVKPM--QKTRRTYPSVVFTSMLASMR 154
           S+ +CN F  FL   S  S+L + +L   +   ++KP+  Q    T  ++V  S+   + 
Sbjct: 245 SEFSCNCFVFFLYMNSISSILNITMLTINRLVSVLKPLTYQTLLTTKRTLVALSIAWVVS 304

Query: 153 VCHFLTIHLSL 121
           V H LT  L+L
Sbjct: 305 VLHGLTATLTL 315


>SB_10624| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2193

 Score = 28.3 bits (60), Expect = 5.2
 Identities = 15/43 (34%), Positives = 23/43 (53%)
 Frame = +3

Query: 441  ESVEEAPFRDLEVDGTSRRRRWSKGEAGDKSERPEGYEPPVQE 569
            E+VE +PF   E+DG  R R   + E  +  +R + YE  + E
Sbjct: 1586 EAVESSPFDFDELDGAKRDRDKYQLEKEEAEKRLQSYEDELNE 1628


>SB_296| Best HMM Match : 7tm_1 (HMM E-Value=2.5e-07)
          Length = 338

 Score = 27.9 bits (59), Expect = 6.9
 Identities = 19/56 (33%), Positives = 30/56 (53%), Gaps = 1/56 (1%)
 Frame = -3

Query: 267 LGVALLRWLKESLLVKPMQKTRRT-YPSVVFTSMLASMRVCHFLTIHLSLSVVRSM 103
           +G ALL  +   L ++  ++ RR  Y S+  T  L+SM +C+ L   LS  VV  +
Sbjct: 34  IGNALLYAVIRKLRMRERRRPRRALYRSLTMT-FLSSMAICNLLNSLLSAGVVNCL 88


>SB_19503| Best HMM Match : Kinesin (HMM E-Value=9.5e-14)
          Length = 869

 Score = 27.9 bits (59), Expect = 6.9
 Identities = 19/88 (21%), Positives = 39/88 (44%), Gaps = 1/88 (1%)
 Frame = +1

Query: 274 QVRAIRKKMCEIITRDVTNS-ELREVVNKLIPDSIAKDIEKACHGIYPLRDVCIRKVKVL 450
           ++R   +K    +   +TN+  +   +  L+   I ++      G +  RD C R V+ L
Sbjct: 421 ELRRFHRKARVAVEAGITNNAHIHTQITSLLDKHIKRESHSVAIGQHVWRDACGRFVRAL 480

Query: 451 KRPRFEISKLMELHGEGGGARGKPETSL 534
           +R     + +++L  +   A  +  TSL
Sbjct: 481 RRHSIAHAHVIDLEKQKLDAEREYVTSL 508


>SB_57495| Best HMM Match : G_glu_transpept (HMM E-Value=0)
          Length = 761

 Score = 27.5 bits (58), Expect = 9.1
 Identities = 16/41 (39%), Positives = 20/41 (48%)
 Frame = +3

Query: 414 SARCLHPKGESVEEAPFRDLEVDGTSRRRRWSKGEAGDKSE 536
           SA C   KG  +E  PFRD EV+  S       G+A +  E
Sbjct: 674 SACCRVVKGRPIEVKPFRDQEVESFSPGLHDLVGQAPEHME 714


>SB_29265| Best HMM Match : OmpH (HMM E-Value=3)
          Length = 218

 Score = 27.5 bits (58), Expect = 9.1
 Identities = 15/44 (34%), Positives = 23/44 (52%)
 Frame = +3

Query: 432 PKGESVEEAPFRDLEVDGTSRRRRWSKGEAGDKSERPEGYEPPV 563
           P+ E V++ P  D+E +   + +  +K     KS  PE Y PPV
Sbjct: 31  PEAEVVDDEPEVDVETETEEKGKAETK-----KSSEPEEYTPPV 69


>SB_9937| Best HMM Match : Fer2 (HMM E-Value=6.9)
          Length = 229

 Score = 27.5 bits (58), Expect = 9.1
 Identities = 12/35 (34%), Positives = 18/35 (51%)
 Frame = +2

Query: 110 LTTDKLRWMVKKWQTLIEANIDVKTTDGYVLRVFC 214
           L T +   +  +WQT +  N+ VK TDG +    C
Sbjct: 142 LPTCQTTMLFSEWQTKLVCNLTVKKTDGKMQMYTC 176


>SB_7895| Best HMM Match : uDENN (HMM E-Value=5.7e-25)
          Length = 945

 Score = 27.5 bits (58), Expect = 9.1
 Identities = 13/45 (28%), Positives = 22/45 (48%)
 Frame = +2

Query: 212 CIGFTNKDSLSQRKSATPSTLRSEQSERKCVKSLHATSLTLNSGR 346
           C+ +   + +S+ + A PS LRS +S+   +   H  SL     R
Sbjct: 564 CVSYIFDNKISEARKALPSVLRSLKSKGAQLALCHELSLRAKQNR 608


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,557,091
Number of Sequences: 59808
Number of extensions: 427497
Number of successful extensions: 1434
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1302
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1434
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1512078125
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)