Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30687
         (614 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g04840.1 68416.m00525 40S ribosomal protein S3A (RPS3aA) simi...   116   1e-26
At4g34670.1 68417.m04922 40S ribosomal protein S3A (RPS3aB)           113   7e-26
At4g33010.1 68417.m04695 glycine dehydrogenase [decarboxylating]...    31   0.61 
At2g20320.1 68415.m02373 DENN (AEX-3) domain-containing protein ...    29   3.2  
At1g27170.1 68414.m03310 disease resistance protein (TIR-NBS-LRR...    28   4.3  
At1g73590.1 68414.m08519 auxin efflux carrier protein, putative ...    28   5.7  
At1g56290.1 68414.m06471 CwfJ-like family protein contains Pfam ...    28   5.7  
At2g29210.1 68415.m03550 splicing factor PWI domain-containing p...    27   7.5  
At5g38550.1 68418.m04661 jacalin lectin family protein similar t...    27   9.9  
At2g21630.1 68415.m02573 transport protein, putative similar to ...    27   9.9  
At1g08190.1 68414.m00905 vacuolar assembly protein, putative (VP...    27   9.9  

>At3g04840.1 68416.m00525 40S ribosomal protein S3A (RPS3aA) similar
           to 40S ribosomal protein S3A (S phase specific protein
           GBIS289) GB:P49396 [Brassica rapa]
          Length = 262

 Score =  116 bits (279), Expect = 1e-26
 Identities = 57/99 (57%), Positives = 70/99 (70%)
 Frame = +2

Query: 2   ADLQADTDAERSFRKFRLIAEYVQGRNVLCNFHGMDLTTDKLRWMVKKWQTLIEANIDVK 181
           ADLQ D D   ++RK RL AE VQGRNVLC F GMD TTDKLR +VKKWQTLIEA++DVK
Sbjct: 71  ADLQGDED--NAYRKIRLRAEDVQGRNVLCQFWGMDFTTDKLRSLVKKWQTLIEAHVDVK 128

Query: 182 TTDGYVLRVFCIGFTNKDSLSQRKSATPSTLRSEQSERK 298
           TTD Y LR+FCI FT + +   +++    + +  Q  RK
Sbjct: 129 TTDSYTLRLFCIAFTKRRANQVKRTCYAQSSQIRQIRRK 167



 Score =  102 bits (245), Expect = 2e-22
 Identities = 42/81 (51%), Positives = 67/81 (82%)
 Frame = +1

Query: 256 CYAQHTQVRAIRKKMCEIITRDVTNSELREVVNKLIPDSIAKDIEKACHGIYPLRDVCIR 435
           CYAQ +Q+R IR+KM +I+ R+ ++ +L+++V K IP++I ++IEKA  GIYPL++V IR
Sbjct: 154 CYAQSSQIRQIRRKMRDIMVREASSCDLKDLVAKFIPEAIGREIEKATQGIYPLQNVFIR 213

Query: 436 KVKVLKRPRFEISKLMELHGE 498
           KVK+LK P+F++ KLM++HG+
Sbjct: 214 KVKILKAPKFDLGKLMDVHGD 234


>At4g34670.1 68417.m04922 40S ribosomal protein S3A (RPS3aB)
          Length = 262

 Score =  113 bits (273), Expect = 7e-26
 Identities = 57/99 (57%), Positives = 70/99 (70%)
 Frame = +2

Query: 2   ADLQADTDAERSFRKFRLIAEYVQGRNVLCNFHGMDLTTDKLRWMVKKWQTLIEANIDVK 181
           ADLQ D D   ++RK RL AE VQGRNVL  F GMD TTDKLR +VKKWQTLIEA++DVK
Sbjct: 71  ADLQNDED--NAYRKIRLRAEDVQGRNVLTQFWGMDFTTDKLRSLVKKWQTLIEAHVDVK 128

Query: 182 TTDGYVLRVFCIGFTNKDSLSQRKSATPSTLRSEQSERK 298
           TTDGY LR+FCI FT + +   +++    + +  Q  RK
Sbjct: 129 TTDGYTLRMFCIAFTKRRANQVKRTCYAQSSQIRQIRRK 167



 Score =  105 bits (253), Expect = 2e-23
 Identities = 44/81 (54%), Positives = 67/81 (82%)
 Frame = +1

Query: 256 CYAQHTQVRAIRKKMCEIITRDVTNSELREVVNKLIPDSIAKDIEKACHGIYPLRDVCIR 435
           CYAQ +Q+R IR+KM EI+ ++ ++ +L+E+V K IP++I ++IEKA  GIYPL++V IR
Sbjct: 154 CYAQSSQIRQIRRKMSEIMVKEASSCDLKELVAKFIPEAIGREIEKATQGIYPLQNVFIR 213

Query: 436 KVKVLKRPRFEISKLMELHGE 498
           KVK+LK P+F++ KLME+HG+
Sbjct: 214 KVKILKAPKFDLGKLMEVHGD 234


>At4g33010.1 68417.m04695 glycine dehydrogenase [decarboxylating],
           putative / glycine decarboxylase, putative / glycine
           cleavage system P-protein, putative strong similarity to
           SP|P49361 Glycine dehydrogenase [decarboxylating] A,
           mitochondrial precursor (EC 1.4.4.2) {Flaveria
           pringlei}; contains Pfam profile PF02347: Glycine
           cleavage system P-protein
          Length = 1037

 Score = 31.1 bits (67), Expect = 0.61
 Identities = 30/126 (23%), Positives = 51/126 (40%)
 Frame = -3

Query: 426 NIAQRVDAMAGLLDVLGNGVRNQLVHHLPEFRVSDVACNDFTHFLSDCSDLSVLGVALLR 247
           +IAQRV  +AG+  +  N +    V  LP F    + C+D  H ++D +  S +    LR
Sbjct: 426 SIAQRVHGLAGIFSLGLNKLGVAEVQELPFFDTVKIKCSD-AHAIADAASKSEIN---LR 481

Query: 246 WLKESLLVKPMQKTRRTYPSVVFTSMLASMRVCHFLTIHLSLSVVRSMPWKLQSTLRPCT 67
            +  + +     +T           + AS +   F    L+  V  S+P  L       T
Sbjct: 482 VVDSTTITASFDETTTLDDVDKLFKVFASGKPVPFTAESLAPEVQNSIPSSLTRESPYLT 541

Query: 66  YSAINL 49
           +   N+
Sbjct: 542 HPIFNM 547


>At2g20320.1 68415.m02373 DENN (AEX-3) domain-containing protein
           contains Pfam domain PF02141: DENN (AEX-3) domain
          Length = 976

 Score = 28.7 bits (61), Expect = 3.2
 Identities = 12/33 (36%), Positives = 19/33 (57%)
 Frame = +1

Query: 415 LRDVCIRKVKVLKRPRFEISKLMELHGEGGGAR 513
           L  VC+   ++++RP   +S    LH  GGG+R
Sbjct: 476 LYGVCLHVSEIVQRPPGVLSTASPLHSSGGGSR 508


>At1g27170.1 68414.m03310 disease resistance protein (TIR-NBS-LRR
            class), putative domain signature TIR-NBS-LRR exists,
            suggestive of a disease resistance protein.
          Length = 1544

 Score = 28.3 bits (60), Expect = 4.3
 Identities = 21/67 (31%), Positives = 32/67 (47%), Gaps = 2/67 (2%)
 Frame = -3

Query: 297  FLSDCSDLSVL--GVALLRWLKESLLVKPMQKTRRTYPSVVFTSMLASMRVCHFLTIHLS 124
            FLS CSDLSVL   +  +  LKE LL     K      + +    + S+R C    + L 
Sbjct: 907  FLSGCSDLSVLPENIGAMTSLKELLLDGTAIKNLPESINRLQNLEILSLRGCKIQELPLC 966

Query: 123  LSVVRSM 103
            +  ++S+
Sbjct: 967  IGTLKSL 973


>At1g73590.1 68414.m08519 auxin efflux carrier protein, putative
           (PIN1) identical to putative auxin efflux carrier
           protein; AtPIN1 [Arabidopsis thaliana] GI:4151319;
           contains Pfam profile PF03547: Auxin Efflux Carrier
          Length = 622

 Score = 27.9 bits (59), Expect = 5.7
 Identities = 18/55 (32%), Positives = 24/55 (43%), Gaps = 4/55 (7%)
 Frame = +3

Query: 402 WHLPSARCLHPKGESVEEAPFRDLEVDGTSRRRRWSKGEA--GDK--SERPEGYE 554
           + L S+R   P+G S     F  +   G  R   +  GEA  G K  + RP  YE
Sbjct: 239 YSLQSSRNPTPRGSSFNHTDFYSMMASGGGRNSNFGPGEAVFGSKGPTPRPSNYE 293


>At1g56290.1 68414.m06471 CwfJ-like family protein contains Pfam
           profiles PF04677: Protein similar to CwfJ N terminus 1,
           PF04676: Protein similar to CwfJ N terminus 2
          Length = 692

 Score = 27.9 bits (59), Expect = 5.7
 Identities = 20/66 (30%), Positives = 31/66 (46%), Gaps = 1/66 (1%)
 Frame = -3

Query: 393 LLDVLGNGVRNQLVHHLPEFRVSDVACNDFTHFLSDCSDL-SVLGVALLRWLKESLLVKP 217
           L+D    G+RN +  + P F V       F H + D     S LG+ ++R + E L  + 
Sbjct: 600 LIDTSVKGLRNSIPKNFPYFHVEFGLDKGFVHVIDDEQQFNSNLGLNVIRGMLE-LPEED 658

Query: 216 MQKTRR 199
           M + RR
Sbjct: 659 MYRRRR 664


>At2g29210.1 68415.m03550 splicing factor PWI domain-containing
           protein contains Pfam profile PF01480: PWI domain
          Length = 878

 Score = 27.5 bits (58), Expect = 7.5
 Identities = 22/52 (42%), Positives = 27/52 (51%), Gaps = 6/52 (11%)
 Frame = -2

Query: 526 SPASPLLHRLRREVPSTSRSRNGASS------TLSPFGCKHRAEGRCHGRPS 389
           S AS    R RR  PS+SRS + + S      + SP G KH+ E R  GR S
Sbjct: 597 SSASRSPDRRRRRSPSSSRSPSRSRSPPVLHRSPSPRGRKHQRERRSPGRLS 648


>At5g38550.1 68418.m04661 jacalin lectin family protein similar to
           myrosinase-binding protein homolog [Arabidopsis
           thaliana] GI:2997767; contains Pfam profile PF01419
           jacalin-like lectin domain
          Length = 594

 Score = 27.1 bits (57), Expect = 9.9
 Identities = 9/12 (75%), Positives = 10/12 (83%)
 Frame = +3

Query: 369 LHCQGHREGLPW 404
           L CQG R+GLPW
Sbjct: 299 LECQGDRKGLPW 310


>At2g21630.1 68415.m02573 transport protein, putative similar to
           Swiss-Prot:Q15436 protein transport protein Sec23A [Homo
           sapiens]
          Length = 761

 Score = 27.1 bits (57), Expect = 9.9
 Identities = 12/40 (30%), Positives = 20/40 (50%)
 Frame = -3

Query: 150 CHFLTIHLSLSVVRSMPWKLQSTLRPCTYSAINLNLRKDL 31
           CHF T+H  L  + + PW + +  RP   + + L +   L
Sbjct: 238 CHF-TLHSVLEELGNSPWPVAADHRPARCTGVALRIAASL 276


>At1g08190.1 68414.m00905 vacuolar assembly protein, putative
           (VPS41) 99.8% identical to Vacuolar assembly protein
           VPS41 homolog (SP:P93043) [Arabidopsis thaliana];
           similar to vacuolar assembly protein vps41 GI:1835787
           from [Lycopersicon esculentum]
          Length = 980

 Score = 27.1 bits (57), Expect = 9.9
 Identities = 14/44 (31%), Positives = 22/44 (50%)
 Frame = -3

Query: 408 DAMAGLLDVLGNGVRNQLVHHLPEFRVSDVACNDFTHFLSDCSD 277
           D    +LD+LGN V+    H  P   V+D+  +    ++  CSD
Sbjct: 78  DGTVRILDLLGNQVKEFRAHTAP---VNDINFDTEGEYIGSCSD 118


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,522,880
Number of Sequences: 28952
Number of extensions: 293661
Number of successful extensions: 977
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 941
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 977
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1236350304
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)