Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30686
         (594 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPB17E12.13 |rpl1802|rpl18-2|60S ribosomal protein L18|Schizos...    90   2e-19
SPBC11C11.07 |rpl1801|rpl18-1, rpl18|60S ribosomal protein L18|S...    87   1e-18
SPAC5D6.07c |||PXA domain protein|Schizosaccharomyces pombe|chr ...    28   0.89 
SPBC30D10.17c |||glucan synthase regulator |Schizosaccharomyces ...    27   1.6  
SPBC29A10.09c |||CAF1 family ribonuclease|Schizosaccharomyces po...    27   1.6  
SPCC1682.11c |||DUF580 family protein|Schizosaccharomyces pombe|...    27   2.1  
SPAC1A6.10 ||SPAC30D11.15c|Moeb/ThiF domain|Schizosaccharomyces ...    26   3.6  
SPAPB8E5.08 |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    26   3.6  
SPAC20G8.09c |||N-acetyltransferase Nat10 |Schizosaccharomyces p...    25   8.3  
SPAC23H4.15 |||ribosome biogenesis protein Tsr1 |Schizosaccharom...    25   8.3  

>SPAPB17E12.13 |rpl1802|rpl18-2|60S ribosomal protein
           L18|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 187

 Score = 90.2 bits (214), Expect = 2e-19
 Identities = 57/174 (32%), Positives = 84/174 (48%), Gaps = 2/174 (1%)
 Frame = +2

Query: 2   GIDINHKHDRKVRRTEVKSQDIXXXXXXXXXXXXXXXTNAKFNQIVLRRLFMSRINRPPI 181
           GIDI   H RK +R++  S+++               T+++FN+ +L+RLF S+ NRPPI
Sbjct: 2   GIDIERHHVRKSQRSKPASENVYLKLLVKLYRFLARRTDSRFNKAILKRLFQSKTNRPPI 61

Query: 182 SVSRLA--RHMKKPTREGLIAVVVGTAQMT*DCTRYRR*RWLLFMLPKKLVHAFWLLEEK 355
           S+S++A     K  + EG   V+VGT           +         K           +
Sbjct: 62  SISKIAALTSRKSASLEGKTTVIVGTVTDDERLLTVPKLSVAALRFTKSARARILKAGGE 121

Query: 356 FLLLISWLFVPPTGKKTVLVQGQRNAREAVRHFGPAPGAPRSHTKPYVRTKDMK 517
            L L       PTG  TVL++G+++AREA RHFG     P  H  PYVR++  K
Sbjct: 122 VLTLDQLALRAPTGSNTVLLRGKKHAREAYRHFG---FGPHKHKAPYVRSEGRK 172



 Score = 64.1 bits (149), Expect = 1e-11
 Identities = 31/47 (65%), Positives = 37/47 (78%)
 Frame = +1

Query: 247 GDSTNDVRLYKIPKMTVAALHVTEKARARILAAGGEILTFDQLALRA 387
           G  T+D RL  +PK++VAAL  T+ ARARIL AGGE+LT DQLALRA
Sbjct: 86  GTVTDDERLLTVPKLSVAALRFTKSARARILKAGGEVLTLDQLALRA 132


>SPBC11C11.07 |rpl1801|rpl18-1, rpl18|60S ribosomal protein
           L18|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 187

 Score = 87.4 bits (207), Expect = 1e-18
 Identities = 56/174 (32%), Positives = 83/174 (47%), Gaps = 2/174 (1%)
 Frame = +2

Query: 2   GIDINHKHDRKVRRTEVKSQDIXXXXXXXXXXXXXXXTNAKFNQIVLRRLFMSRINRPPI 181
           GIDI   H +K +R++  S+++               T+++FN+ +L+RLF S+ NRPPI
Sbjct: 2   GIDIERHHVKKSQRSKPASENVYLKLLVKLYRFLARRTDSRFNKAILKRLFQSKTNRPPI 61

Query: 182 SVSRLA--RHMKKPTREGLIAVVVGTAQMT*DCTRYRR*RWLLFMLPKKLVHAFWLLEEK 355
           S+S++A     K  + +    VVVGT           +         K           +
Sbjct: 62  SISKIAALTSRKSASSQNKTTVVVGTVTDDERMLTVPKLSIAALRFTKSARARILKAGGE 121

Query: 356 FLLLISWLFVPPTGKKTVLVQGQRNAREAVRHFGPAPGAPRSHTKPYVRTKDMK 517
            L L       PTG  TVLV+G+++AREA RHFG     P  H  PYVR++  K
Sbjct: 122 VLTLDQLALRAPTGSNTVLVRGKKHAREAYRHFG---FGPHKHKAPYVRSEGRK 172



 Score = 62.9 bits (146), Expect = 3e-11
 Identities = 29/47 (61%), Positives = 37/47 (78%)
 Frame = +1

Query: 247 GDSTNDVRLYKIPKMTVAALHVTEKARARILAAGGEILTFDQLALRA 387
           G  T+D R+  +PK+++AAL  T+ ARARIL AGGE+LT DQLALRA
Sbjct: 86  GTVTDDERMLTVPKLSIAALRFTKSARARILKAGGEVLTLDQLALRA 132


>SPAC5D6.07c |||PXA domain protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 495

 Score = 28.3 bits (60), Expect = 0.89
 Identities = 14/46 (30%), Positives = 23/46 (50%)
 Frame = +1

Query: 238 RGSGDSTNDVRLYKIPKMTVAALHVTEKARARILAAGGEILTFDQL 375
           R S     D+  Y+IP + +  +  TE+A+ R     G+IL  D +
Sbjct: 51  RLSRQDAMDLLFYEIPFLLIKHIENTEEAKLRFALPQGQILEIDTI 96


>SPBC30D10.17c |||glucan synthase regulator |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 504

 Score = 27.5 bits (58), Expect = 1.6
 Identities = 12/25 (48%), Positives = 17/25 (68%)
 Frame = -1

Query: 363 SKNFSSSSQNACTSFFGNMKSSHRH 289
           SKN  SS  N+ TSFF ++ + +RH
Sbjct: 2   SKNSFSSMANSVTSFFQSLTTPNRH 26


>SPBC29A10.09c |||CAF1 family ribonuclease|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 427

 Score = 27.5 bits (58), Expect = 1.6
 Identities = 15/39 (38%), Positives = 23/39 (58%)
 Frame = -1

Query: 360 KNFSSSSQNACTSFFGNMKSSHRHLRYLVQSHVICAVPT 244
           KN+ SS  +  TS + N+ +S+R +R  +QS V    PT
Sbjct: 170 KNWLSSELSHSTSKYLNITTSNRFIRKAIQSLVKIEFPT 208


>SPCC1682.11c |||DUF580 family protein|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 574

 Score = 27.1 bits (57), Expect = 2.1
 Identities = 12/51 (23%), Positives = 24/51 (47%)
 Frame = -1

Query: 309 MKSSHRHLRYLVQSHVICAVPTTTAIKPSRVGFFMWRAKRDTEIGGRLIRL 157
           +K+S  HL   +Q  ++        + P  + +++WR +   E    +IRL
Sbjct: 231 LKASRIHLETSIQPKLMLLTGIILLVAPILLSYYVWRRRIHFETSFNIIRL 281


>SPAC1A6.10 ||SPAC30D11.15c|Moeb/ThiF domain|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 485

 Score = 26.2 bits (55), Expect = 3.6
 Identities = 16/48 (33%), Positives = 23/48 (47%), Gaps = 3/48 (6%)
 Frame = +3

Query: 402 RQYWYKVSEMLVRQCVTLALLQ--EHRAL-TLNPMFAPRT*KSKAQSS 536
           + +W  VS  +   CV L  L+  +HR++  L  M  P   KS   SS
Sbjct: 30  KSFWIAVSSSVTTACVILGTLEFRKHRSIRRLQSMIVPEAGKSIQLSS 77


>SPAPB8E5.08 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 103

 Score = 26.2 bits (55), Expect = 3.6
 Identities = 8/13 (61%), Positives = 12/13 (92%)
 Frame = -2

Query: 593 FFFFFSRVCSPYI 555
           +FFF+S +CSPY+
Sbjct: 84  YFFFYSFLCSPYL 96


>SPAC20G8.09c |||N-acetyltransferase Nat10 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1033

 Score = 25.0 bits (52), Expect = 8.3
 Identities = 12/30 (40%), Positives = 18/30 (60%)
 Frame = +3

Query: 402 RQYWYKVSEMLVRQCVTLALLQEHRALTLN 491
           R  +YK SE ++ Q   + +LQ+  ALT N
Sbjct: 104 RYCYYKESEKILGQTYGMLVLQDFEALTPN 133


>SPAC23H4.15 |||ribosome biogenesis protein Tsr1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 783

 Score = 25.0 bits (52), Expect = 8.3
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = -3

Query: 424 LTLYQYCLLASRRHEEPADQK*EFLLQ 344
           LT+ Q+  +    +EEP + K E LLQ
Sbjct: 582 LTVSQFTAMQHSEYEEPIESKEELLLQ 608


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,539,671
Number of Sequences: 5004
Number of extensions: 52958
Number of successful extensions: 149
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 140
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 149
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 258201856
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)