BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= wdV30686 (594 letters) Database: rice 37,544 sequences; 14,793,348 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value 05_01_0401 + 3169979-3169981,3170071-3170160,3170556-3170684,317... 107 5e-24 07_03_1667 + 28484069-28484071,28484151-28484240,28484339-284844... 106 2e-23 03_02_0954 - 12687373-12687582,12688885-12689067,12689160-126892... 64 1e-10 04_01_0249 - 3284107-3286377 29 2.1 06_01_1101 - 9044679-9045320,9045484-9045890,9046020-9046274,904... 29 2.8 03_06_0569 + 34789286-34790052,34791216-34791512,34791604-347918... 29 2.8 04_04_1333 - 32721968-32721973,32722101-32722706,32722822-32722941 28 4.9 09_04_0310 + 16578679-16580936,16581027-16581294 28 6.5 09_04_0365 - 16962608-16963174,16963301-16963486,16963824-169638... 27 8.5 02_05_0598 + 30250535-30251218 27 8.5 >05_01_0401 + 3169979-3169981,3170071-3170160,3170556-3170684, 3170814-3170999,3172001-3172159 Length = 188 Score = 107 bits (258), Expect = 5e-24 Identities = 64/173 (36%), Positives = 89/173 (51%), Gaps = 1/173 (0%) Frame = +2 Query: 2 GID-INHKHDRKVRRTEVKSQDIXXXXXXXXXXXXXXXTNAKFNQIVLRRLFMSRINRPP 178 GID + ++K +RT +S D+ T + FN ++L+RLFMS+ NRPP Sbjct: 2 GIDLVAGGRNKKTKRTAPRSDDVYLKLLVKLYRFLVRRTKSNFNAVILKRLFMSKTNRPP 61 Query: 179 ISVSRLARHMKKPTREGLIAVVVGTAQMT*DCTRYRR*RWLLFMLPKKLVHAFWLLEEKF 358 +S+ RLA+ M+ E IAV+VGT + + + + Sbjct: 62 LSLRRLAKFMEGK-EENNIAVIVGTVTDDKRIQEIPKMKVTALRFTETARARIVNAGGEC 120 Query: 359 LLLISWLFVPPTGKKTVLVQGQRNAREAVRHFGPAPGAPRSHTKPYVRTKDMK 517 L P G+ TVL++G +NAREAVRHFG APG P SHTKPYVR+K K Sbjct: 121 LTFDQLALRAPLGENTVLLRGPKNAREAVRHFGKAPGVPHSHTKPYVRSKGRK 173 Score = 63.7 bits (148), Expect = 1e-10 Identities = 32/47 (68%), Positives = 36/47 (76%) Frame = +1 Query: 247 GDSTNDVRLYKIPKMTVAALHVTEKARARILAAGGEILTFDQLALRA 387 G T+D R+ +IPKM V AL TE ARARI+ AGGE LTFDQLALRA Sbjct: 84 GTVTDDKRIQEIPKMKVTALRFTETARARIVNAGGECLTFDQLALRA 130 >07_03_1667 + 28484069-28484071,28484151-28484240,28484339-28484491, 28484575-28484757,28486137-28486295 Length = 195 Score = 106 bits (254), Expect = 2e-23 Identities = 71/181 (39%), Positives = 99/181 (54%), Gaps = 9/181 (4%) Frame = +2 Query: 2 GID-INHKHDRKVRRTEVKSQDIXXXXXXXXXXXXXXXTNAKFNQIVLRRLFMSRINRPP 178 GID + ++K +RT +S+D+ T + FN ++L+RLFMS+ NRPP Sbjct: 2 GIDLVAGGRNKKTKRTAPRSEDVYLKLIVKLYRFLVRRTKSHFNAVILKRLFMSKTNRPP 61 Query: 179 ISVSRLARHM--KKPTREGL----IAVVVGTAQMT*DCTRYRR*RWLLFMLP-KKLVHAF 337 +S+ RL R M K P R + IAV+VGT +T D Y + L + A Sbjct: 62 LSMRRLVRFMEGKVPDRHAISGDQIAVIVGT--VTDDKRIYEVPAMKVAALRFTETARAR 119 Query: 338 WLLEEKFLLLISWLFV-PPTGKKTVLVQGQRNAREAVRHFGPAPGAPRSHTKPYVRTKDM 514 + L L + P G+ TVL++G +NAREAV+HFGPAPG P S+TKPYVR+K Sbjct: 120 IINAGGECLTFDQLALRAPLGQNTVLLRGPKNAREAVKHFGPAPGVPHSNTKPYVRSKGR 179 Query: 515 K 517 K Sbjct: 180 K 180 Score = 66.1 bits (154), Expect = 2e-11 Identities = 32/47 (68%), Positives = 37/47 (78%) Frame = +1 Query: 247 GDSTNDVRLYKIPKMTVAALHVTEKARARILAAGGEILTFDQLALRA 387 G T+D R+Y++P M VAAL TE ARARI+ AGGE LTFDQLALRA Sbjct: 91 GTVTDDKRIYEVPAMKVAALRFTETARARIINAGGECLTFDQLALRA 137 >03_02_0954 - 12687373-12687582,12688885-12689067,12689160-12689288, 12689375-12689464,12689548-12689550 Length = 204 Score = 63.7 bits (148), Expect = 1e-10 Identities = 35/85 (41%), Positives = 49/85 (57%), Gaps = 1/85 (1%) Frame = +2 Query: 2 GID-INHKHDRKVRRTEVKSQDIXXXXXXXXXXXXXXXTNAKFNQIVLRRLFMSRINRPP 178 GID + ++K +RT KS D+ T + FN ++LRRLFMS+ NRPP Sbjct: 2 GIDLVAGGRNKKTKRTAPKSDDVYLKLIVKLYRFLVRRTKSPFNAVILRRLFMSKTNRPP 61 Query: 179 ISVSRLARHMKKPTREGLIAVVVGT 253 +S+ RL R M+ +E IAV+VGT Sbjct: 62 LSLRRLVRFME--GKENQIAVIVGT 84 Score = 63.7 bits (148), Expect = 1e-10 Identities = 31/47 (65%), Positives = 36/47 (76%) Frame = +1 Query: 247 GDSTNDVRLYKIPKMTVAALHVTEKARARILAAGGEILTFDQLALRA 387 G T+D R+Y++P M VAAL TE ARARI+ GGE LTFDQLALRA Sbjct: 83 GTVTDDKRVYEVPAMKVAALRFTETARARIVNTGGECLTFDQLALRA 129 Score = 62.5 bits (145), Expect = 2e-10 Identities = 26/37 (70%), Positives = 32/37 (86%) Frame = +2 Query: 407 VLVQGQRNAREAVRHFGPAPGAPRSHTKPYVRTKDMK 517 VL++G +NAREAV+HFGPAPG P S+TKPYVR+K K Sbjct: 153 VLLRGPKNAREAVKHFGPAPGVPHSNTKPYVRSKGRK 189 >04_01_0249 - 3284107-3286377 Length = 756 Score = 29.5 bits (63), Expect = 2.1 Identities = 16/49 (32%), Positives = 28/49 (57%) Frame = +2 Query: 137 VLRRLFMSRINRPPISVSRLARHMKKPTREGLIAVVVGTAQMT*DCTRY 283 ++RRL +S +N + R+ + KKPTR + + +G + +CTRY Sbjct: 359 LIRRLIVSDLN-----LFRILDNNKKPTRYRMWSQTIGQYNLLHECTRY 402 >06_01_1101 - 9044679-9045320,9045484-9045890,9046020-9046274, 9046375-9046498,9047237-9047289,9047388-9047648, 9047795-9047848,9047975-9048458,9048554-9048592 Length = 772 Score = 29.1 bits (62), Expect = 2.8 Identities = 16/36 (44%), Positives = 22/36 (61%), Gaps = 1/36 (2%) Frame = -1 Query: 249 PTTTAIKPSRVGFFMWR-AKRDTEIGGRLIRLIKSR 145 P TTA KP RV F + + K D E+ G L L+++R Sbjct: 676 PNTTAPKPKRVRFALPKDTKIDREVRGELQELMEAR 711 >03_06_0569 + 34789286-34790052,34791216-34791512,34791604-34791835, 34792334-34792391,34792800-34792931,34793108-34793246, 34793460-34793622,34793693-34793734 Length = 609 Score = 29.1 bits (62), Expect = 2.8 Identities = 19/71 (26%), Positives = 27/71 (38%), Gaps = 8/71 (11%) Frame = -3 Query: 334 CVHELFR*HEEQPPSSSVSCTVSRHLCCPH-----YHGNQTLTSWLLHVARQTRHRDW-- 176 C+HE + E+ S C ++ CC H ++ N+T S L W Sbjct: 458 CLHERYNQAHEKEYGKSNLCGLALATCCHHLCQWNHYANKTFLSGLGITEEDFHTMTWFS 517 Query: 175 -WPVDTAHKEP 146 W VD H P Sbjct: 518 SWAVDGDHSSP 528 >04_04_1333 - 32721968-32721973,32722101-32722706,32722822-32722941 Length = 243 Score = 28.3 bits (60), Expect = 4.9 Identities = 25/92 (27%), Positives = 40/92 (43%), Gaps = 2/92 (2%) Frame = +1 Query: 277 KIPKMTVAALHVTEKARARILAAGGEILTFDQLALRA--SDWQEDSTGTRSAKCS*GSAS 450 ++P AL T A R+ + FD L LRA +D ++D + G+AS Sbjct: 31 RLPATVAMALISTPSAAIRLTPINS-VTHFDVLRLRARRTDGEDDVSALPEID---GAAS 86 Query: 451 LWPCSRSTALSH*TLCSHQGHEKARPSRRANV 546 PC+ STA + + A P+ R ++ Sbjct: 87 ALPCTASTASPRSCVPGFPNTQSAFPNTRLSL 118 >09_04_0310 + 16578679-16580936,16581027-16581294 Length = 841 Score = 27.9 bits (59), Expect = 6.5 Identities = 13/45 (28%), Positives = 24/45 (53%) Frame = -3 Query: 466 WSRAKVTHCLTSISLTLYQYCLLASRRHEEPADQK*EFLLQQPKC 332 W +V H LT I T+ C+++S ++E + + +F+ KC Sbjct: 611 WKLKRVDHSLTGIWKTMKPNCIVSSPFYKEGTNIRSQFVSVLRKC 655 >09_04_0365 - 16962608-16963174,16963301-16963486,16963824-16963896, 16964307-16964497,16964982-16965198,16965394-16965797, 16966593-16966658,16966668-16966721,16966945-16967079, 16967194-16967391,16967734-16967918,16968990-16969527 Length = 937 Score = 27.5 bits (58), Expect = 8.5 Identities = 13/43 (30%), Positives = 21/43 (48%) Frame = -1 Query: 303 SSHRHLRYLVQSHVICAVPTTTAIKPSRVGFFMWRAKRDTEIG 175 +S L ++ + C +PS+V FFMW A+R+ G Sbjct: 875 ASAYELFFMANTEARCGSLIWHTREPSKVKFFMWLAEREVSHG 917 >02_05_0598 + 30250535-30251218 Length = 227 Score = 27.5 bits (58), Expect = 8.5 Identities = 20/64 (31%), Positives = 32/64 (50%), Gaps = 1/64 (1%) Frame = -2 Query: 359 RISP-PAAKMRARAFSVT*RAATVIFGILYSLTSFVLSPLPRQSNPHELASSCGAPNETQ 183 R +P PA + +AR + A G+ ++ + + +P PR SNP+ + GA Sbjct: 18 RAAPVPALRSQARHPLLLGHAGETALGV-WATRARLPAPPPRASNPNNDNDNSGAVEAPD 76 Query: 182 RLVA 171 RLVA Sbjct: 77 RLVA 80 Database: rice Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 14,793,348 Number of sequences in database: 37,544 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 17,426,058 Number of Sequences: 37544 Number of extensions: 392993 Number of successful extensions: 1069 Number of sequences better than 10.0: 10 Number of HSP's better than 10.0 without gapping: 1029 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1068 length of database: 14,793,348 effective HSP length: 78 effective length of database: 11,864,916 effective search space used: 1411925004 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
- SilkBase 1999-2023 -