Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30686
         (594 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_1564| Best HMM Match : No HMM Matches (HMM E-Value=.)               98   5e-21
SB_49884| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.7  
SB_18632| Best HMM Match : Nitrophorin (HMM E-Value=0.67)              28   4.9  
SB_42858| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   4.9  
SB_48685| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.6  
SB_24186| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.6  
SB_41995| Best HMM Match : ANF_receptor (HMM E-Value=0)                27   8.6  
SB_4587| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   8.6  

>SB_1564| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1066

 Score = 97.9 bits (233), Expect = 5e-21
 Identities = 67/164 (40%), Positives = 85/164 (51%), Gaps = 2/164 (1%)
 Frame = +2

Query: 2   GIDINHKHDRKVRRTEVKSQDIXXXXXXXXXXXXXXXTNAKFNQIVLRRLFMSRINRPPI 181
           GIDI  KH +K  R E  SQ++               TNAKFNQIV++RL MSR  RPP+
Sbjct: 109 GIDIEKKHPKKNYRREPVSQNVYIRLLVKLYRFLSRRTNAKFNQIVMKRLCMSRTKRPPL 168

Query: 182 SVSRLARHMKKPTREGLIAVVVGTAQMT*DCTRYRR*RWLLFMLP-KKLVHAFWLLEEKF 358
           S++RL R MK    +  I VVVG+  +T D   +      +  L   +   A  L     
Sbjct: 169 SLARLVRKMKASGHKDKICVVVGS--ITDDKRIFEVPALKICALRFSETARARILKAGGE 226

Query: 359 LLLISWLFV-PPTGKKTVLVQGQRNAREAVRHFGPAPGAPRSHT 487
           +L    L +  P G+ TVL+QG R AREA RH G APG P S T
Sbjct: 227 ILTFDQLALRAPLGQNTVLLQGPRKAREAERHMGLAPGVPHSDT 270



 Score = 63.7 bits (148), Expect = 1e-10
 Identities = 30/51 (58%), Positives = 38/51 (74%)
 Frame = +1

Query: 235 CRGSGDSTNDVRLYKIPKMTVAALHVTEKARARILAAGGEILTFDQLALRA 387
           C   G  T+D R++++P + + AL  +E ARARIL AGGEILTFDQLALRA
Sbjct: 187 CVVVGSITDDKRIFEVPALKICALRFSETARARILKAGGEILTFDQLALRA 237


>SB_49884| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 117

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 13/34 (38%), Positives = 21/34 (61%)
 Frame = -1

Query: 381 KSQLIKSKNFSSSSQNACTSFFGNMKSSHRHLRY 280
           +S L+ S+N   ++QNA T+FF + K  H +  Y
Sbjct: 19  ESTLLTSENNDIANQNADTAFFTSKKKRHNNNSY 52


>SB_18632| Best HMM Match : Nitrophorin (HMM E-Value=0.67)
          Length = 258

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 20/78 (25%), Positives = 35/78 (44%), Gaps = 2/78 (2%)
 Frame = +1

Query: 181 LCVSFGAPHEEANS*GFD--CRGSGDSTNDVRLYKIPKMTVAALHVTEKARARILAAGGE 354
           LC+  G   E  +S  +   C+        VR   +P+++ AA++ + +   ++   GGE
Sbjct: 167 LCLYKGLKDETLDSLRYARFCQKISTGNTQVRPESLPQISAAAIYHSLRVHHQV--HGGE 224

Query: 355 ILTFDQLALRASDWQEDS 408
           +L F Q       W E S
Sbjct: 225 VLHFHQKTGGGRKWTESS 242


>SB_42858| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 953

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 17/45 (37%), Positives = 25/45 (55%)
 Frame = -1

Query: 273 QSHVICAVPTTTAIKPSRVGFFMWRAKRDTEIGGRLIRLIKSRRR 139
           Q   IC+ P   AI+P  V ++  R+K   E+  RL+R+ K R R
Sbjct: 15  QEDRICSNPQGLAIRPPSVLWYTERSK--DEVRKRLLRVAKDRPR 57


>SB_48685| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 246

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 13/46 (28%), Positives = 24/46 (52%)
 Frame = +3

Query: 387 LRLARRQYWYKVSEMLVRQCVTLALLQEHRALTLNPMFAPRT*KSK 524
           +R   R+ W K  +++V  CV LA++     L +  +F  R  +S+
Sbjct: 35  IRNVHREGWQKSRDLIVLNCVLLAVIMLCAMLLIAVIFCRRAPRSR 80


>SB_24186| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 246

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 13/46 (28%), Positives = 24/46 (52%)
 Frame = +3

Query: 387 LRLARRQYWYKVSEMLVRQCVTLALLQEHRALTLNPMFAPRT*KSK 524
           +R   R+ W K  +++V  CV LA++     L +  +F  R  +S+
Sbjct: 35  IRNVHREGWQKSRDLIVLNCVLLAVIMLCAMLLIAVIFCRRAPRSR 80


>SB_41995| Best HMM Match : ANF_receptor (HMM E-Value=0)
          Length = 785

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 9/25 (36%), Positives = 13/25 (52%)
 Frame = -3

Query: 247 HYHGNQTLTSWLLHVARQTRHRDWW 173
           HYH N+ L  +L  ++R      WW
Sbjct: 342 HYHSNEVLKDYLEMLSRTGPRHGWW 366


>SB_4587| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2656

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 12/21 (57%), Positives = 16/21 (76%)
 Frame = -3

Query: 469  SWSRAKVTHCLTSISLTLYQY 407
            +W RAKV HC +S S+T+ QY
Sbjct: 2539 TWYRAKVLHCDSSFSITV-QY 2558


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,695,130
Number of Sequences: 59808
Number of extensions: 425202
Number of successful extensions: 1124
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1010
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1122
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1427401750
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)