Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30686
         (594 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL021492-6|CAA16387.1|  188|Caenorhabditis elegans Hypothetical ...   120   8e-28
U38377-2|AAN72421.1|  199|Caenorhabditis elegans Sox (mammalian ...    28   5.8  
U38377-1|AAA79747.2|  283|Caenorhabditis elegans Sox (mammalian ...    28   5.8  

>AL021492-6|CAA16387.1|  188|Caenorhabditis elegans Hypothetical
           protein Y45F10D.12 protein.
          Length = 188

 Score =  120 bits (289), Expect = 8e-28
 Identities = 74/174 (42%), Positives = 97/174 (55%), Gaps = 2/174 (1%)
 Frame = +2

Query: 2   GIDINHKHDRKVRRTEVKSQDIXXXXXXXXXXXXXXXTNAKFNQIVLRRLFMSRINRPPI 181
           GIDINHKHDR  RRT  KS++                T  KFN IVL+RL MSR NR P+
Sbjct: 2   GIDINHKHDRVARRTAPKSENPYLRLLSKLYAFLARRTGEKFNAIVLKRLRMSRRNRQPL 61

Query: 182 SVSRLARHMKKPTREGLIAVVVGTAQMT*DCTRYRR*RWLLFML-PKKLVHAFWLLEEKF 358
           S+++LAR ++K   E    V + T  +T D   Y   +  +  L   +   A  L     
Sbjct: 62  SLAKLARAVQKAGNENKTVVTLST--VTDDARLYTVPKISVAALHVTEGARARILAAGGE 119

Query: 359 LLLISWLFV-PPTGKKTVLVQGQRNAREAVRHFGPAPGAPRSHTKPYVRTKDMK 517
           ++ +  L +  P G+ TV +QG R+AREA +HFGPAPG P SHTKPYVR+K  K
Sbjct: 120 IITLDQLALKSPKGENTVFLQGPRSAREAEKHFGPAPGVPHSHTKPYVRSKGRK 173



 Score = 72.1 bits (169), Expect = 3e-13
 Identities = 37/60 (61%), Positives = 46/60 (76%), Gaps = 2/60 (3%)
 Frame = +1

Query: 256 TNDVRLYKIPKMTVAALHVTEKARARILAAGGEILTFDQLALRASDWQED--STGTRSAK 429
           T+D RLY +PK++VAALHVTE ARARILAAGGEI+T DQLAL++   +      G RSA+
Sbjct: 87  TDDARLYTVPKISVAALHVTEGARARILAAGGEIITLDQLALKSPKGENTVFLQGPRSAR 146


>U38377-2|AAN72421.1|  199|Caenorhabditis elegans Sox (mammalian sry
           box) familyprotein 2, isoform b protein.
          Length = 199

 Score = 27.9 bits (59), Expect = 5.8
 Identities = 14/46 (30%), Positives = 26/46 (56%), Gaps = 1/46 (2%)
 Frame = +1

Query: 124 IQSDRSTPALYEPYQPATNLCVSFGAPHEEANS*GFDCR-GSGDST 258
           + +D S+P+ ++P   +TN   S+  P  E++  G D   G+ DS+
Sbjct: 116 VPTDNSSPSQFQPSPMSTNFAGSYLTPKSESSPVGSDSTVGTVDSS 161


>U38377-1|AAA79747.2|  283|Caenorhabditis elegans Sox (mammalian sry
           box) familyprotein 2, isoform a protein.
          Length = 283

 Score = 27.9 bits (59), Expect = 5.8
 Identities = 14/46 (30%), Positives = 26/46 (56%), Gaps = 1/46 (2%)
 Frame = +1

Query: 124 IQSDRSTPALYEPYQPATNLCVSFGAPHEEANS*GFDCR-GSGDST 258
           + +D S+P+ ++P   +TN   S+  P  E++  G D   G+ DS+
Sbjct: 200 VPTDNSSPSQFQPSPMSTNFAGSYLTPKSESSPVGSDSTVGTVDSS 245


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,504,822
Number of Sequences: 27780
Number of extensions: 323246
Number of successful extensions: 845
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 811
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 844
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1258229602
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)