Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30686
         (594 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.     27   0.10 
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    24   1.3  
S78459-1|AAB34403.1|   50|Apis mellifera mast cell-degranulating...    23   2.3  
AY647436-1|AAU81605.1|  567|Apis mellifera juvenile hormone este...    23   3.0  
AY526235-1|AAS20468.1|  169|Apis mellifera esterase protein.           23   3.0  
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    23   3.0  
AB083009-1|BAC54130.1|  567|Apis mellifera esterase protein.           23   3.0  
DQ026036-1|AAY87895.1|  529|Apis mellifera nicotinic acetylcholi...    21   9.1  
DQ026035-1|AAY87894.1|  529|Apis mellifera nicotinic acetylcholi...    21   9.1  

>AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.
          Length = 602

 Score = 27.5 bits (58), Expect = 0.10
 Identities = 14/39 (35%), Positives = 19/39 (48%)
 Frame = +1

Query: 58  SRYLLEVTCKALQILGQTYKCQIQSDRSTPALYEPYQPA 174
           S Y +  T    Q   QT + Q+  DR++P  Y  Y PA
Sbjct: 394 SLYPMATTSPQSQSTIQTLRPQVSPDRTSPMEYRLYNPA 432


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
            protein.
          Length = 1124

 Score = 23.8 bits (49), Expect = 1.3
 Identities = 15/47 (31%), Positives = 23/47 (48%)
 Frame = +3

Query: 288  DDGGCSSCYRKSSCTHFGCWRRNSYF*SAGSSCLRLARRQYWYKVSE 428
            +DGGCSS    S+  +   +++N Y     SS    +   + YK SE
Sbjct: 924  NDGGCSSLVDVSTPVNKKVYKQNDYIVDESSSSSFYS--SFLYKSSE 968


>S78459-1|AAB34403.1|   50|Apis mellifera mast cell-degranulating
           peptide protein.
          Length = 50

 Score = 23.0 bits (47), Expect = 2.3
 Identities = 7/17 (41%), Positives = 10/17 (58%)
 Frame = -3

Query: 295 PSSSVSCTVSRHLCCPH 245
           P+ S+ C   RH+  PH
Sbjct: 24  PTMSIKCNCKRHVIKPH 40


>AY647436-1|AAU81605.1|  567|Apis mellifera juvenile hormone
           esterase protein.
          Length = 567

 Score = 22.6 bits (46), Expect = 3.0
 Identities = 12/49 (24%), Positives = 20/49 (40%)
 Frame = +2

Query: 428 NAREAVRHFGPAPGAPRSHTKPYVRTKDMKKQGPVVVLMSNF*YKDYTP 574
           N+ E  +  G   G P  + K  +R    +    +V  ++NF    Y P
Sbjct: 247 NSLEKAKQVGAFMGCPTRNVKEMIRCLRYRPARAIVETLANFMRFYYNP 295


>AY526235-1|AAS20468.1|  169|Apis mellifera esterase protein.
          Length = 169

 Score = 22.6 bits (46), Expect = 3.0
 Identities = 12/49 (24%), Positives = 20/49 (40%)
 Frame = +2

Query: 428 NAREAVRHFGPAPGAPRSHTKPYVRTKDMKKQGPVVVLMSNF*YKDYTP 574
           N+ E  +  G   G P  + K  +R    +    +V  ++NF    Y P
Sbjct: 118 NSLEKAKQVGAFMGCPTRNVKEMIRCLRYRPARAIVETLANFMRFYYNP 166


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 22.6 bits (46), Expect = 3.0
 Identities = 8/22 (36%), Positives = 16/22 (72%)
 Frame = -1

Query: 198 AKRDTEIGGRLIRLIKSRRRTI 133
           AK+ T IGG+ + ++KS  +++
Sbjct: 889 AKKATNIGGKPVAVVKSSAQSL 910


>AB083009-1|BAC54130.1|  567|Apis mellifera esterase protein.
          Length = 567

 Score = 22.6 bits (46), Expect = 3.0
 Identities = 12/49 (24%), Positives = 20/49 (40%)
 Frame = +2

Query: 428 NAREAVRHFGPAPGAPRSHTKPYVRTKDMKKQGPVVVLMSNF*YKDYTP 574
           N+ E  +  G   G P  + K  +R    +    +V  ++NF    Y P
Sbjct: 247 NSLEKAKQVGAFMGCPTRNVKEMIRCLRYRPARAIVETLANFMRFYYNP 295


>DQ026036-1|AAY87895.1|  529|Apis mellifera nicotinic acetylcholine
           receptor alpha6subunit protein.
          Length = 529

 Score = 21.0 bits (42), Expect = 9.1
 Identities = 8/16 (50%), Positives = 13/16 (81%)
 Frame = -2

Query: 302 AATVIFGILYSLTSFV 255
           ++ VIFG+L+ L SF+
Sbjct: 14  SSCVIFGVLFVLFSFL 29


>DQ026035-1|AAY87894.1|  529|Apis mellifera nicotinic acetylcholine
           receptor alpha6subunit protein.
          Length = 529

 Score = 21.0 bits (42), Expect = 9.1
 Identities = 8/16 (50%), Positives = 13/16 (81%)
 Frame = -2

Query: 302 AATVIFGILYSLTSFV 255
           ++ VIFG+L+ L SF+
Sbjct: 14  SSCVIFGVLFVLFSFL 29


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 171,881
Number of Sequences: 438
Number of extensions: 3738
Number of successful extensions: 11
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17359926
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)