Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV30686
(594 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g05590.1 68416.m00621 60S ribosomal protein L18 (RPL18B) simi... 107 7e-24
At5g27850.1 68418.m03341 60S ribosomal protein L18 (RPL18C) 60S ... 100 6e-22
At2g47570.1 68415.m05936 60S ribosomal protein L18 (RPL18A) 77 7e-15
At5g67320.1 68418.m08490 WD-40 repeat family protein strong simi... 32 0.33
At2g02640.1 68415.m00203 DC1 domain-containing protein contain... 31 0.58
At5g04020.1 68418.m00382 calmodulin-binding protein-related (PIC... 28 5.4
At3g59820.1 68416.m06675 calcium-binding mitochondrial protein-r... 28 5.4
At1g32190.1 68414.m03959 expressed protein 27 7.1
At3g20010.1 68416.m02531 SNF2 domain-containing protein / helica... 27 9.4
At1g31870.1 68414.m03917 expressed protein 27 9.4
>At3g05590.1 68416.m00621 60S ribosomal protein L18 (RPL18B) similar
to GB:P42791
Length = 187
Score = 107 bits (256), Expect = 7e-24
Identities = 68/176 (38%), Positives = 94/176 (53%), Gaps = 4/176 (2%)
Frame = +2
Query: 2 GID-INHKHDRKVRRTEVKSQDIXXXXXXXXXXXXXXXTNAKFNQIVLRRLFMSRINRPP 178
GID I +K +RT KS D+ TN+KFN ++L+RLFMS++N+ P
Sbjct: 2 GIDLIAGGKSKKTKRTAPKSDDVYLKLTVKLYRFLVRRTNSKFNGVILKRLFMSKVNKAP 61
Query: 179 ISVSRLARHMKKPTREGLIAVVVGTAQMT*DCTRYRR*RWLLFMLPKKLVHAFWLLEE-- 352
+S+SRL M +E IAV+VGT D R + + A +E+
Sbjct: 62 LSLSRLVEFMTG--KEDKIAVLVGTIT---DDLRVHEIPAMKVTALRFTERARARIEKAG 116
Query: 353 -KFLLLISWLFVPPTGKKTVLVQGQRNAREAVRHFGPAPGAPRSHTKPYVRTKDMK 517
+ L P G+ TVL++G +N+REAV+HFGPAPG P SH+KPYVR K K
Sbjct: 117 GECLTFDQLALRAPLGQNTVLLRGPKNSREAVKHFGPAPGVPHSHSKPYVRAKGRK 172
Score = 63.3 bits (147), Expect = 1e-10
Identities = 31/47 (65%), Positives = 37/47 (78%)
Frame = +1
Query: 247 GDSTNDVRLYKIPKMTVAALHVTEKARARILAAGGEILTFDQLALRA 387
G T+D+R+++IP M V AL TE+ARARI AGGE LTFDQLALRA
Sbjct: 83 GTITDDLRVHEIPAMKVTALRFTERARARIEKAGGECLTFDQLALRA 129
>At5g27850.1 68418.m03341 60S ribosomal protein L18 (RPL18C) 60S
ribosomal protein L18, Arabidopsis thaliana,
SWISSPROT:RL18_ARATH
Length = 187
Score = 100 bits (240), Expect = 6e-22
Identities = 65/176 (36%), Positives = 93/176 (52%), Gaps = 4/176 (2%)
Frame = +2
Query: 2 GID-INHKHDRKVRRTEVKSQDIXXXXXXXXXXXXXXXTNAKFNQIVLRRLFMSRINRPP 178
GID I +K +RT KS D+ +N+ FN ++L+RLFMS++N+ P
Sbjct: 2 GIDLIAGGKSKKTKRTAPKSDDVYLKLLVKLYRFLVRRSNSNFNAVILKRLFMSKVNKAP 61
Query: 179 ISVSRLARHMKKPTREGLIAVVVGTAQMT*DCTRYRR*RWLLFMLPKKLVHAFWLLEE-- 352
+S+SRL M ++ IAV+VGT D R + + A +E+
Sbjct: 62 LSLSRLVEFMTG--KDDKIAVLVGTIT---DDLRVHEIPAMKVTALRFTERARARIEKAG 116
Query: 353 -KFLLLISWLFVPPTGKKTVLVQGQRNAREAVRHFGPAPGAPRSHTKPYVRTKDMK 517
+ L P G+ TVL++G +N+REAV+HFGPAPG P S+TKPYVR K K
Sbjct: 117 GECLTFDQLALRAPLGQNTVLLRGPKNSREAVKHFGPAPGVPHSNTKPYVRHKGRK 172
Score = 63.3 bits (147), Expect = 1e-10
Identities = 31/47 (65%), Positives = 37/47 (78%)
Frame = +1
Query: 247 GDSTNDVRLYKIPKMTVAALHVTEKARARILAAGGEILTFDQLALRA 387
G T+D+R+++IP M V AL TE+ARARI AGGE LTFDQLALRA
Sbjct: 83 GTITDDLRVHEIPAMKVTALRFTERARARIEKAGGECLTFDQLALRA 129
>At2g47570.1 68415.m05936 60S ribosomal protein L18 (RPL18A)
Length = 135
Score = 77.4 bits (182), Expect = 7e-15
Identities = 52/125 (41%), Positives = 70/125 (56%), Gaps = 4/125 (3%)
Frame = +2
Query: 155 MSRINRPPISVSRLARHMKKPTREGLIAVVVGTAQMT*DCTRYRR*RWLLFMLPKKLVHA 334
MS++N+ P+S+SRL R+M ++G IAV+VGT D R L + A
Sbjct: 1 MSKVNKAPLSLSRLVRYMDG--KDGKIAVIVGTVT---DDVRIEDVPALTVTALRFTESA 55
Query: 335 FWLLEEKF--LLLISWLFVP-PT-GKKTVLVQGQRNAREAVRHFGPAPGAPRSHTKPYVR 502
+ + L L +P PT + TVL++G +N REAV+HFGPAPG P SHTKPYVR
Sbjct: 56 RARIHKAGGECLTFDQLALPCPTWSENTVLLRGPKNTREAVKHFGPAPGVPHSHTKPYVR 115
Query: 503 TKDMK 517
K
Sbjct: 116 QTGKK 120
Score = 66.1 bits (154), Expect = 2e-11
Identities = 33/61 (54%), Positives = 39/61 (63%)
Frame = +1
Query: 247 GDSTNDVRLYKIPKMTVAALHVTEKARARILAAGGEILTFDQLALRASDWQEDSTGTRSA 426
G T+DVR+ +P +TV AL TE ARARI AGGE LTFDQLAL W E++ R
Sbjct: 30 GTVTDDVRIEDVPALTVTALRFTESARARIHKAGGECLTFDQLALPCPTWSENTVLLRGP 89
Query: 427 K 429
K
Sbjct: 90 K 90
>At5g67320.1 68418.m08490 WD-40 repeat family protein strong
similarity to unknown protein (ref|NP_005638.1)
Length = 613
Score = 31.9 bits (69), Expect = 0.33
Identities = 25/90 (27%), Positives = 38/90 (42%)
Frame = +1
Query: 241 GSGDSTNDVRLYKIPKMTVAALHVTEKARARILAAGGEILTFDQLALRASDWQEDSTGTR 420
GSGD+T R++ IP+ + A+H A IL + DW + T
Sbjct: 283 GSGDAT--ARIWSIPEGSFKAVHTGRNINALILKHAKGKSNEKSKDVTTLDWNGEGTLLA 340
Query: 421 SAKCS*GSASLWPCSRSTALSH*TLCSHQG 510
+ C G A +W + +S TL H+G
Sbjct: 341 TGSCD-GQARIWTLN-GELIS--TLSKHKG 366
>At2g02640.1 68415.m00203 DC1 domain-containing protein contains
Pfam profile PF03107: DC1 domain
Length = 627
Score = 31.1 bits (67), Expect = 0.58
Identities = 11/22 (50%), Positives = 15/22 (68%)
Frame = +3
Query: 300 CSSCYRKSSCTHFGCWRRNSYF 365
CS+C RKS+ + C+ RN YF
Sbjct: 423 CSACMRKSNGFGYSCYNRNCYF 444
>At5g04020.1 68418.m00382 calmodulin-binding protein-related (PICBP)
contains similarity to potato calmodulin-binding protein
PCBP GI:17933110 from [Solanum tuberosum]
Length = 1495
Score = 27.9 bits (59), Expect = 5.4
Identities = 15/39 (38%), Positives = 20/39 (51%)
Frame = -3
Query: 484 VRARCSWSRAKVTHCLTSISLTLYQYCLLASRRHEEPAD 368
++A CS S K + S + Y+YC L RRH AD
Sbjct: 209 LKATCS-SAMKGSSSKRSNDVCTYRYCSLHGRRHSHAAD 246
>At3g59820.1 68416.m06675 calcium-binding mitochondrial
protein-related contains weak similarity to
Calcium-binding mitochondrial protein Anon-60Da
(Swiss-Prot:P91927) [Drosophila melanogaster]
Length = 755
Score = 27.9 bits (59), Expect = 5.4
Identities = 12/36 (33%), Positives = 18/36 (50%)
Frame = +2
Query: 128 NQIVLRRLFMSRINRPPISVSRLARHMKKPTREGLI 235
+Q V + S INRPP+ + H R+GL+
Sbjct: 34 SQTVHSHAYHSGINRPPVETKPVTEHKSFTRRDGLL 69
>At1g32190.1 68414.m03959 expressed protein
Length = 422
Score = 27.5 bits (58), Expect = 7.1
Identities = 8/17 (47%), Positives = 10/17 (58%)
Frame = +3
Query: 300 CSSCYRKSSCTHFGCWR 350
CSSC+ K C CW+
Sbjct: 359 CSSCFGKPKCPKCSCWK 375
>At3g20010.1 68416.m02531 SNF2 domain-containing protein / helicase
domain-containing protein / RING finger
domain-containing protein similar to transcription
factor RUSH-1alpha [Oryctolagus cuniculus] GI:1655930;
contains Pfam profiles PF00271: Helicase conserved
C-terminal domain, PF00176: SNF2 family N-terminal
domain, PF00097: Zinc finger, C3HC4 type (RING finger)
Length = 1047
Score = 27.1 bits (57), Expect = 9.4
Identities = 15/34 (44%), Positives = 16/34 (47%)
Frame = -1
Query: 396 PVGGTKSQLIKSKNFSSSSQNACTSFFGNMKSSH 295
PV K QL + FS SS CTS SSH
Sbjct: 787 PVPRCKQQLARDVVFSESSLRNCTSDDSGCSSSH 820
>At1g31870.1 68414.m03917 expressed protein
Length = 561
Score = 27.1 bits (57), Expect = 9.4
Identities = 12/27 (44%), Positives = 13/27 (48%)
Frame = +2
Query: 434 REAVRHFGPAPGAPRSHTKPYVRTKDM 514
R RH P+P R HTKP DM
Sbjct: 151 RRRKRHNSPSPEPNRKHTKPVSLDSDM 177
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,667,528
Number of Sequences: 28952
Number of extensions: 300074
Number of successful extensions: 798
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 766
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 798
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1180950720
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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