Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30683
         (645 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_1272 - 25360180-25360286,25360454-25360658,25360748-253609...   108   3e-24
03_01_0582 - 4318837-4318967,4319219-4319399,4319504-4319701,431...   108   3e-24
04_03_0565 + 17207582-17207811,17208026-17208320                       30   1.8  
05_03_0609 - 16161801-16162848,16163525-16163682,16163806-161638...    27   9.7  

>07_03_1272 -
           25360180-25360286,25360454-25360658,25360748-25360945,
           25361034-25361296,25361865-25362009
          Length = 305

 Score =  108 bits (260), Expect = 3e-24
 Identities = 49/81 (60%), Positives = 62/81 (76%), Gaps = 1/81 (1%)
 Frame = +3

Query: 3   QIQAAFREPRLLIVLDPAQDHQPITEASYVNIPVIALCNTDSPLRFVDIAIPCNTKSSHS 182
           Q+Q +F EPRLLI+ DP  DHQPI E++  NIP IA C+TDSP+R+VDI IP N K   S
Sbjct: 115 QLQTSFSEPRLLILTDPRTDHQPIKESALGNIPTIAFCDTDSPMRYVDIGIPANNKGKQS 174

Query: 183 IGLMWWLLAREVLRLRG-VLP 242
           IG ++WLLAR VL++RG +LP
Sbjct: 175 IGCLFWLLARMVLQMRGTILP 195



 Score = 37.9 bits (84), Expect = 0.007
 Identities = 14/21 (66%), Positives = 20/21 (95%)
 Frame = +2

Query: 257 DVVVDLFFYRDPEESEKDEQQ 319
           DV+VDLFFYRDPEE+++ E++
Sbjct: 200 DVMVDLFFYRDPEEAKEQEEE 220


>03_01_0582 -
           4318837-4318967,4319219-4319399,4319504-4319701,
           4319791-4320053,4320453-4320597
          Length = 305

 Score =  108 bits (260), Expect = 3e-24
 Identities = 49/81 (60%), Positives = 63/81 (77%), Gaps = 1/81 (1%)
 Frame = +3

Query: 3   QIQAAFREPRLLIVLDPAQDHQPITEASYVNIPVIALCNTDSPLRFVDIAIPCNTKSSHS 182
           Q+Q +F EPRLLI+ DP  DHQPI E++  NIP IA C+TDSP+R+VDI IP N K  +S
Sbjct: 115 QLQTSFSEPRLLILTDPRTDHQPIKESALGNIPTIAFCDTDSPMRYVDIGIPANNKGRNS 174

Query: 183 IGLMWWLLAREVLRLRG-VLP 242
           IG ++WLLAR VL++RG +LP
Sbjct: 175 IGCLFWLLARMVLQMRGTILP 195



 Score = 40.7 bits (91), Expect = 0.001
 Identities = 16/25 (64%), Positives = 22/25 (88%)
 Frame = +2

Query: 257 DVVVDLFFYRDPEESEKDEQQAKEQ 331
           DV+VDLFFYRDPEE+++ E++A  Q
Sbjct: 200 DVMVDLFFYRDPEEAKEQEEEAPAQ 224


>04_03_0565 + 17207582-17207811,17208026-17208320
          Length = 174

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 12/33 (36%), Positives = 19/33 (57%)
 Frame = +3

Query: 195 WWLLAREVLRLRGVLPRDQRGMLWLICSSTVTL 293
           WWL++ +   ++ VLPR+Q G+    C   V L
Sbjct: 81  WWLVSGDRREIKAVLPREQHGVWRRQCRRPVQL 113


>05_03_0609 -
           16161801-16162848,16163525-16163682,16163806-16163835,
           16164242-16164323,16164599-16164672
          Length = 463

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 13/33 (39%), Positives = 15/33 (45%)
 Frame = -2

Query: 206 QQPPHQTNRVGRLGVAWDSNVHKS*WGVCVAQS 108
           + PP Q  RVG  GV      H   WG C  +S
Sbjct: 17  EMPPVQPGRVGLWGVTVRCRDHGRCWGFCWVES 49


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,483,433
Number of Sequences: 37544
Number of extensions: 321437
Number of successful extensions: 900
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 882
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 900
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1596695220
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)