Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30683
         (645 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_11396| Best HMM Match : Ribosomal_S2 (HMM E-Value=0)               143   9e-35
SB_40833| Best HMM Match : No HMM Matches (HMM E-Value=.)              33   0.20 
SB_57493| Best HMM Match : Surf_Ag_VNR (HMM E-Value=0.00037)           31   1.1  
SB_24578| Best HMM Match : rve (HMM E-Value=4.8e-35)                   30   1.4  
SB_49472| Best HMM Match : BDS_I_II (HMM E-Value=1.5)                  30   1.9  
SB_58902| Best HMM Match : TNFR_c6 (HMM E-Value=0.032)                 29   3.2  
SB_51220| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.3  
SB_9425| Best HMM Match : F-box (HMM E-Value=1.1e-11)                  29   4.3  
SB_49599| Best HMM Match : DDE (HMM E-Value=3.7e-20)                   28   5.7  
SB_13671| Best HMM Match : RVT_1 (HMM E-Value=1.8e-11)                 28   5.7  
SB_6853| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   7.5  
SB_4520| Best HMM Match : Tsg (HMM E-Value=7.8)                        28   7.5  
SB_50756| Best HMM Match : S-antigen (HMM E-Value=2.4e-09)             27   9.9  
SB_49066| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.9  
SB_43019| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.9  
SB_35318| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.9  

>SB_11396| Best HMM Match : Ribosomal_S2 (HMM E-Value=0)
          Length = 328

 Score =  143 bits (347), Expect = 9e-35
 Identities = 66/81 (81%), Positives = 71/81 (87%)
 Frame = +3

Query: 3   QIQAAFREPRLLIVLDPAQDHQPITEASYVNIPVIALCNTDSPLRFVDIAIPCNTKSSHS 182
           QIQAAFREPRLLIV DP  DHQP+TEASYVNIPVIA CNTDSPLR VD+AIPCN K  HS
Sbjct: 111 QIQAAFREPRLLIVCDPRIDHQPVTEASYVNIPVIAFCNTDSPLRHVDVAIPCNNKGIHS 170

Query: 183 IGLMWWLLAREVLRLRGVLPR 245
           IGLM+WLLAREVLR+RG + R
Sbjct: 171 IGLMFWLLAREVLRMRGSISR 191



 Score = 37.9 bits (84), Expect = 0.007
 Identities = 14/22 (63%), Positives = 20/22 (90%)
 Frame = +2

Query: 257 DVVVDLFFYRDPEESEKDEQQA 322
           +++ DL+FYRDPEE+EK+EQ A
Sbjct: 196 EIMPDLYFYRDPEEAEKEEQAA 217


>SB_40833| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1300

 Score = 33.1 bits (72), Expect = 0.20
 Identities = 18/50 (36%), Positives = 26/50 (52%)
 Frame = +2

Query: 8    SSCIP*TSSLDCIGPCTRPSTHY*SFICQHSCDCFVQHRLPTKICGHCYP 157
            SSCI   S+ DCI  C+ PS     F C+ +C         T++C +C+P
Sbjct: 874  SSCIG-PSANDCI-TCSDPSNALIGFTCKANCTPGQFKNTATRVCENCHP 921


>SB_57493| Best HMM Match : Surf_Ag_VNR (HMM E-Value=0.00037)
          Length = 432

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 15/32 (46%), Positives = 22/32 (68%)
 Frame = +3

Query: 45  LDPAQDHQPITEASYVNIPVIALCNTDSPLRF 140
           LDP  +HQPIT+ +   I ++A   TD+PL+F
Sbjct: 119 LDPDVEHQPITDRAEACICLVA---TDAPLKF 147


>SB_24578| Best HMM Match : rve (HMM E-Value=4.8e-35)
          Length = 1772

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 21/60 (35%), Positives = 29/60 (48%), Gaps = 4/60 (6%)
 Frame = -3

Query: 253  RWSRGSTPRSLNTSRANNHHIKPIEWEDLVLHGIAMST-NLSGE---SVLHKAITGMLTY 86
            RWS+G TP      ++   H   I    L+ HG   ST NL+ E    VL++   G +TY
Sbjct: 1403 RWSKGQTPNGKVAQKSKFQH--GIAGTQLIYHGTGPSTKNLTTEQAKQVLNENELGTMTY 1460


>SB_49472| Best HMM Match : BDS_I_II (HMM E-Value=1.5)
          Length = 315

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 11/22 (50%), Positives = 14/22 (63%)
 Frame = +3

Query: 177 HSIGLMWWLLAREVLRLRGVLP 242
           H  G +WW+L  E LR + VLP
Sbjct: 46  HDDGSVWWVLTSESLRAKAVLP 67


>SB_58902| Best HMM Match : TNFR_c6 (HMM E-Value=0.032)
          Length = 397

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 13/42 (30%), Positives = 22/42 (52%)
 Frame = +2

Query: 26  TSSLDCIGPCTRPSTHY*SFICQHSCDCFVQHRLPTKICGHC 151
           TSSLD + PC+  S H+   +  + C C+  +++    C  C
Sbjct: 331 TSSLDTLAPCSF-SCHFACDVNTNQCICYYGYQMSDNKCKAC 371


>SB_51220| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1601

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 15/41 (36%), Positives = 23/41 (56%)
 Frame = -3

Query: 235 TPRSLNTSRANNHHIKPIEWEDLVLHGIAMSTNLSGESVLH 113
           T +SLN S  N   + P EW + V+ G+     LSG ++L+
Sbjct: 864 TAQSLNVSVDNLKFLAPTEWRE-VIPGLKQEILLSGSNMLN 903


>SB_9425| Best HMM Match : F-box (HMM E-Value=1.1e-11)
          Length = 376

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 16/44 (36%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
 Frame = +3

Query: 483 NGLPRY-KMREHNCRRTSSRHRSALVGWIRSRLECCINTLHWLI 611
           NG+PR  K+R+ +  R  SR+R + VG I     CC N  ++ +
Sbjct: 117 NGVPRKTKLRDRHIIRLISRNRRSHVGHIDLSGPCCKNITNFTL 160


>SB_49599| Best HMM Match : DDE (HMM E-Value=3.7e-20)
          Length = 428

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 19/52 (36%), Positives = 28/52 (53%), Gaps = 2/52 (3%)
 Frame = +3

Query: 21  REPR-LLIVLDPAQDHQPITEASYVNIPVIALC-NTDSPLRFVDIAIPCNTK 170
           RE R +++ +D A  H P  + +Y NI +I L  NT S  + +D  I  N K
Sbjct: 255 RENRNIMLFMDNAPCHTPSLKNTYCNIKIIFLSKNTTSKTQPLDSGIIANWK 306


>SB_13671| Best HMM Match : RVT_1 (HMM E-Value=1.8e-11)
          Length = 1702

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 17/46 (36%), Positives = 27/46 (58%)
 Frame = +3

Query: 123 DSPLRFVDIAIPCNTKSSHSIGLMWWLLAREVLRLRGVLPRDQRGM 260
           +SPL +  I +PCNT +S+     W+LLA  +  ++ VL  D R +
Sbjct: 495 ESPLSYDLILVPCNTPNSNH----WFLLA-VLPHMKAVLLLDSRAV 535


>SB_6853| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 171

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 15/36 (41%), Positives = 23/36 (63%), Gaps = 2/36 (5%)
 Frame = +3

Query: 501 KMREHNCRRTSSRH-RSALVGWIRSRLECCIN-TLH 602
           +MR+HNC+ T+ R    A+ GW+   +E  +N TLH
Sbjct: 104 RMRDHNCKSTAPRSTNGAIEGWM--YIERTMNVTLH 137


>SB_4520| Best HMM Match : Tsg (HMM E-Value=7.8)
          Length = 594

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 16/51 (31%), Positives = 25/51 (49%), Gaps = 4/51 (7%)
 Frame = -3

Query: 253 RWSRGSTPRSLNTSRA---NNHHIKPIEWE-DLVLHGIAMSTNLSGESVLH 113
           RWS  +TPR   TS     N  H+ P+  + D+  H  A + +L   S ++
Sbjct: 62  RWSHATTPRGGGTSSVLALNLAHVPPVSGDYDVAFHKHAAAVHLEDWSTIN 112


>SB_50756| Best HMM Match : S-antigen (HMM E-Value=2.4e-09)
          Length = 712

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 12/29 (41%), Positives = 16/29 (55%), Gaps = 2/29 (6%)
 Frame = -2

Query: 272 NQPQHPALVTGKHTT--KPQHFTCQQPPH 192
           ++P H AL    H+   KP H T  +PPH
Sbjct: 159 DKPPHSALDKPPHSALDKPPHLTLDKPPH 187


>SB_49066| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 92

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 10/23 (43%), Positives = 16/23 (69%), Gaps = 1/23 (4%)
 Frame = +3

Query: 501 KMREHNCRRTSSRH-RSALVGWI 566
           +MR+HNC+ T+ R    A+ GW+
Sbjct: 25  RMRDHNCKSTAPRSTNGAIEGWM 47


>SB_43019| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 92

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 10/23 (43%), Positives = 16/23 (69%), Gaps = 1/23 (4%)
 Frame = +3

Query: 501 KMREHNCRRTSSRH-RSALVGWI 566
           +MR+HNC+ T+ R    A+ GW+
Sbjct: 25  RMRDHNCKSTAPRSTNGAIEGWM 47


>SB_35318| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 92

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 10/23 (43%), Positives = 16/23 (69%), Gaps = 1/23 (4%)
 Frame = +3

Query: 501 KMREHNCRRTSSRH-RSALVGWI 566
           +MR+HNC+ T+ R    A+ GW+
Sbjct: 25  RMRDHNCKSTAPRSTNGAIKGWM 47


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,060,193
Number of Sequences: 59808
Number of extensions: 389652
Number of successful extensions: 1029
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 929
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1027
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1633044375
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)