Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30683
         (645 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z37983-1|CAA86061.1|  276|Caenorhabditis elegans Hypothetical pr...   120   1e-27
AC006637-1|AAK85476.2|  342|Caenorhabditis elegans Hypothetical ...    29   2.1  
Z48241-4|CAA88284.1|  468|Caenorhabditis elegans Hypothetical pr...    29   2.8  
Z48241-3|CAC42265.1|  490|Caenorhabditis elegans Hypothetical pr...    29   2.8  
AF241847-1|AAF71523.1|  468|Caenorhabditis elegans LAG-3B protein.     29   2.8  
AF241846-1|AAF71522.1|  490|Caenorhabditis elegans LAG-3A protein.     29   2.8  
AF098995-8|AAC67477.1|  306|Caenorhabditis elegans F-box b prote...    29   3.7  
U39742-3|AAY86225.1|  188|Caenorhabditis elegans Hypothetical pr...    28   4.9  
AL032621-5|CAA21492.2|  404|Caenorhabditis elegans Hypothetical ...    28   4.9  
AF022982-6|AAB69935.1|  264|Caenorhabditis elegans Hypothetical ...    28   4.9  
AL033510-7|CAA22069.1|  124|Caenorhabditis elegans Hypothetical ...    28   6.5  

>Z37983-1|CAA86061.1|  276|Caenorhabditis elegans Hypothetical
           protein B0393.1 protein.
          Length = 276

 Score =  120 bits (288), Expect = 1e-27
 Identities = 50/81 (61%), Positives = 63/81 (77%)
 Frame = +3

Query: 3   QIQAAFREPRLLIVLDPAQDHQPITEASYVNIPVIALCNTDSPLRFVDIAIPCNTKSSHS 182
           QIQ  F+EPRLL++ DP  DHQ +TEASYV +PVI+  NT+SPL+ +DI +PCN K   S
Sbjct: 111 QIQKTFKEPRLLVISDPRIDHQAVTEASYVGVPVISFVNTESPLKLIDIGVPCNNKGERS 170

Query: 183 IGLMWWLLAREVLRLRGVLPR 245
           IGLMWW+LARE+L LRG + R
Sbjct: 171 IGLMWWMLAREILILRGKISR 191



 Score = 33.5 bits (73), Expect = 0.13
 Identities = 12/23 (52%), Positives = 19/23 (82%)
 Frame = +2

Query: 254 RDVVVDLFFYRDPEESEKDEQQA 322
           ++++ DL+FYRDP E+EK+E  A
Sbjct: 200 KEIMPDLYFYRDPTETEKEETGA 222


>AC006637-1|AAK85476.2|  342|Caenorhabditis elegans Hypothetical
           protein F41B4.1 protein.
          Length = 342

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 13/29 (44%), Positives = 20/29 (68%)
 Frame = -1

Query: 276 NKSTTTSRAGHGEAHHEASTLHVPTTTTS 190
           ++ST+TSR  H + +  AST+H  T TT+
Sbjct: 313 HQSTSTSRHVHQQYNRPASTIHTTTYTTT 341


>Z48241-4|CAA88284.1|  468|Caenorhabditis elegans Hypothetical
           protein C32A3.1b protein.
          Length = 468

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 19/68 (27%), Positives = 29/68 (42%)
 Frame = -3

Query: 340 YHSXXXXXXXXXXXXFRVTVEEQINHNIPRWSRGSTPRSLNTSRANNHHIKPIEWEDLVL 161
           YHS              +T  +QI+H +P  S   + RS+ T  ++ H   P E    + 
Sbjct: 160 YHSQQQQYIMMQQQHHHMTGMQQIHHQMPSTSSADSIRSVPTPASSMHQPSPAE----MR 215

Query: 160 HGIAMSTN 137
           +G  MS N
Sbjct: 216 NGCGMSRN 223


>Z48241-3|CAC42265.1|  490|Caenorhabditis elegans Hypothetical
           protein C32A3.1a protein.
          Length = 490

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 19/68 (27%), Positives = 29/68 (42%)
 Frame = -3

Query: 340 YHSXXXXXXXXXXXXFRVTVEEQINHNIPRWSRGSTPRSLNTSRANNHHIKPIEWEDLVL 161
           YHS              +T  +QI+H +P  S   + RS+ T  ++ H   P E    + 
Sbjct: 182 YHSQQQQYIMMQQQHHHMTGMQQIHHQMPSTSSADSIRSVPTPASSMHQPSPAE----MR 237

Query: 160 HGIAMSTN 137
           +G  MS N
Sbjct: 238 NGCGMSRN 245


>AF241847-1|AAF71523.1|  468|Caenorhabditis elegans LAG-3B protein.
          Length = 468

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 19/68 (27%), Positives = 29/68 (42%)
 Frame = -3

Query: 340 YHSXXXXXXXXXXXXFRVTVEEQINHNIPRWSRGSTPRSLNTSRANNHHIKPIEWEDLVL 161
           YHS              +T  +QI+H +P  S   + RS+ T  ++ H   P E    + 
Sbjct: 160 YHSQQQQYIMMQQQHHHMTGMQQIHHQMPSTSSADSIRSVPTPASSMHQPSPAE----MR 215

Query: 160 HGIAMSTN 137
           +G  MS N
Sbjct: 216 NGCGMSRN 223


>AF241846-1|AAF71522.1|  490|Caenorhabditis elegans LAG-3A protein.
          Length = 490

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 19/68 (27%), Positives = 29/68 (42%)
 Frame = -3

Query: 340 YHSXXXXXXXXXXXXFRVTVEEQINHNIPRWSRGSTPRSLNTSRANNHHIKPIEWEDLVL 161
           YHS              +T  +QI+H +P  S   + RS+ T  ++ H   P E    + 
Sbjct: 182 YHSQQQQYIMMQQQHHHMTGMQQIHHQMPSTSSADSIRSVPTPASSMHQPSPAE----MR 237

Query: 160 HGIAMSTN 137
           +G  MS N
Sbjct: 238 NGCGMSRN 245


>AF098995-8|AAC67477.1|  306|Caenorhabditis elegans F-box b protein
           protein 18 protein.
          Length = 306

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 15/48 (31%), Positives = 25/48 (52%)
 Frame = -3

Query: 292 RVTVEEQINHNIPRWSRGSTPRSLNTSRANNHHIKPIEWEDLVLHGIA 149
           +V  ++ +N  +  W +GS PR    + A+N H + I  E +   GIA
Sbjct: 213 QVISDKDLNIFMRNWIKGSNPRLRKLTNASNEHNRVIV-ESVFFQGIA 259


>U39742-3|AAY86225.1|  188|Caenorhabditis elegans Hypothetical
           protein C25F6.8 protein.
          Length = 188

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 12/36 (33%), Positives = 21/36 (58%)
 Frame = +3

Query: 114 CNTDSPLRFVDIAIPCNTKSSHSIGLMWWLLAREVL 221
           CNTD+  R +     CNT   + +G+ + L+AR ++
Sbjct: 49  CNTDAEFRLIQCCSSCNT---NGVGIAYDLVARSLV 81


>AL032621-5|CAA21492.2|  404|Caenorhabditis elegans Hypothetical
           protein Y45F3A.8 protein.
          Length = 404

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 14/39 (35%), Positives = 19/39 (48%), Gaps = 3/39 (7%)
 Frame = +2

Query: 86  ICQHSCDCFVQHRLPTKICGHCYPM---QHQVFPLYWFD 193
           +C+HS    +      K CGHC PM   +HQ  P +  D
Sbjct: 342 LCEHSRYKTLMENYCPKACGHCIPMCRDRHQNCPQFHED 380


>AF022982-6|AAB69935.1|  264|Caenorhabditis elegans Hypothetical
           protein T23B12.3 protein.
          Length = 264

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 15/67 (22%), Positives = 32/67 (47%)
 Frame = +3

Query: 57  QDHQPITEASYVNIPVIALCNTDSPLRFVDIAIPCNTKSSHSIGLMWWLLAREVLRLRGV 236
           ++H  I EA+ + IP I + +++S   ++   +P N  +  S   +  +    V + +  
Sbjct: 197 ENHPAIVEAAKMAIPTIGVVDSNSDPAYLTYLVPANDDTPQSTEYLLRMFKEAVRKGQEE 256

Query: 237 LPRDQRG 257
             R Q+G
Sbjct: 257 RKRQQQG 263


>AL033510-7|CAA22069.1|  124|Caenorhabditis elegans Hypothetical
           protein Y40H7A.11 protein.
          Length = 124

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 9/15 (60%), Positives = 11/15 (73%)
 Frame = +3

Query: 165 TKSSHSIGLMWWLLA 209
           T+  H IG+MWWL A
Sbjct: 72  TRVEHKIGIMWWLCA 86


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,845,389
Number of Sequences: 27780
Number of extensions: 276009
Number of successful extensions: 936
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 888
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 932
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1423653030
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)