Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30683
         (645 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g72370.1 68414.m08371 40S ribosomal protein SA (RPSaA) identi...   114   4e-26
At3g04770.2 68416.m00514 40S ribosomal protein SA (RPSaB) identi...   109   2e-24
At3g04770.1 68416.m00513 40S ribosomal protein SA (RPSaB) identi...   109   2e-24
At3g03600.1 68416.m00363 ribosomal protein S2, mitochondrial (RP...    32   0.28 
At3g06070.1 68416.m00694 expressed protein                             31   0.87 
At5g09560.1 68418.m01107 KH domain-containing protein various pr...    27   8.1  
At5g02270.1 68418.m00150 ABC transporter family protein NBD-like...    27   8.1  
At3g54570.1 68416.m06038 calmodulin-binding protein-related cont...    27   8.1  
At2g02640.1 68415.m00203 DC1 domain-containing protein   contain...    27   8.1  
At2g02610.1 68415.m00200 DC1 domain-containing protein   contain...    27   8.1  

>At1g72370.1 68414.m08371 40S ribosomal protein SA (RPSaA) identical
           to laminin receptor-like protein GB:U01955 [Arabidopsis
           thaliana]; identical to cDNA laminin receptor homologue
           GI:16379
          Length = 298

 Score =  114 bits (275), Expect = 4e-26
 Identities = 50/84 (59%), Positives = 63/84 (75%)
 Frame = +3

Query: 3   QIQAAFREPRLLIVLDPAQDHQPITEASYVNIPVIALCNTDSPLRFVDIAIPCNTKSSHS 182
           Q+Q +F EPRLLI+ DP  DHQPI E +  NIP+IA C+TDSP+RFVDI IP N K  HS
Sbjct: 115 QMQTSFSEPRLLILTDPRTDHQPIKEGALGNIPIIAFCDTDSPMRFVDIGIPANNKGKHS 174

Query: 183 IGLMWWLLAREVLRLRGVLPRDQR 254
           IG ++WLLAR VL++RG +   Q+
Sbjct: 175 IGCLFWLLARMVLQMRGTIAAGQK 198



 Score = 35.9 bits (79), Expect = 0.023
 Identities = 16/26 (61%), Positives = 22/26 (84%), Gaps = 1/26 (3%)
 Frame = +2

Query: 257 DVVVDLFFYRDPEESE-KDEQQAKEQ 331
           DV+VDLFFYR+PEE++ +DE +A  Q
Sbjct: 200 DVMVDLFFYREPEETKPEDEDEAGPQ 225


>At3g04770.2 68416.m00514 40S ribosomal protein SA (RPSaB) identical
           to p40 protein homolog GB:AAB67866 [Arabidopsis
           thaliana]; similar to 40S ribosomal protein SA (P40)
           GB:O65751 [Cicer arietinum]
          Length = 280

 Score =  109 bits (262), Expect = 2e-24
 Identities = 49/84 (58%), Positives = 61/84 (72%)
 Frame = +3

Query: 3   QIQAAFREPRLLIVLDPAQDHQPITEASYVNIPVIALCNTDSPLRFVDIAIPCNTKSSHS 182
           Q+Q +F EPRLLI+ DP  DHQPI E +  NIP IA C+TDSP+ FVDI IP N K  HS
Sbjct: 116 QMQTSFSEPRLLILTDPRTDHQPIKEGALGNIPTIAFCDTDSPMGFVDIGIPANNKGKHS 175

Query: 183 IGLMWWLLAREVLRLRGVLPRDQR 254
           IG ++WLLAR VL++RG +   Q+
Sbjct: 176 IGCLFWLLARMVLQMRGTILAAQK 199



 Score = 34.7 bits (76), Expect = 0.053
 Identities = 13/24 (54%), Positives = 20/24 (83%)
 Frame = +2

Query: 257 DVVVDLFFYRDPEESEKDEQQAKE 328
           DV+VDLFFYR+PEE++++  +  E
Sbjct: 201 DVMVDLFFYREPEEAKQEGDEEAE 224


>At3g04770.1 68416.m00513 40S ribosomal protein SA (RPSaB) identical
           to p40 protein homolog GB:AAB67866 [Arabidopsis
           thaliana]; similar to 40S ribosomal protein SA (P40)
           GB:O65751 [Cicer arietinum]
          Length = 332

 Score =  109 bits (262), Expect = 2e-24
 Identities = 49/84 (58%), Positives = 61/84 (72%)
 Frame = +3

Query: 3   QIQAAFREPRLLIVLDPAQDHQPITEASYVNIPVIALCNTDSPLRFVDIAIPCNTKSSHS 182
           Q+Q +F EPRLLI+ DP  DHQPI E +  NIP IA C+TDSP+ FVDI IP N K  HS
Sbjct: 116 QMQTSFSEPRLLILTDPRTDHQPIKEGALGNIPTIAFCDTDSPMGFVDIGIPANNKGKHS 175

Query: 183 IGLMWWLLAREVLRLRGVLPRDQR 254
           IG ++WLLAR VL++RG +   Q+
Sbjct: 176 IGCLFWLLARMVLQMRGTILAAQK 199


>At3g03600.1 68416.m00363 ribosomal protein S2, mitochondrial (RPS2)
           identical to SP|Q9GCB9 Mitochondrial ribosomal protein
           S2 {Arabidopsis thaliana}; contains Pfam profile
           PF00318: ribosomal protein S2
          Length = 219

 Score = 32.3 bits (70), Expect = 0.28
 Identities = 17/51 (33%), Positives = 27/51 (52%), Gaps = 1/51 (1%)
 Frame = +3

Query: 27  PRLLIVLDPAQDHQPITEASYVNIPVIALCNTDSPLRFVD-IAIPCNTKSS 176
           P  ++V D  +    I EAS + IPV+A+ + + PL F + I  P   + S
Sbjct: 131 PDCVVVFDSERKSSVILEASKLQIPVVAIVDPNVPLEFFEKITYPVPARDS 181


>At3g06070.1 68416.m00694 expressed protein
          Length = 151

 Score = 30.7 bits (66), Expect = 0.87
 Identities = 15/31 (48%), Positives = 20/31 (64%), Gaps = 3/31 (9%)
 Frame = -3

Query: 277 EQINHNIPRWSRGS---TPRSLNTSRANNHH 194
           EQIN+N+ R S+G+    PRS    R +NHH
Sbjct: 61  EQINYNVIRESKGTGVFIPRSSQPRRKHNHH 91


>At5g09560.1 68418.m01107 KH domain-containing protein various
           predicted RNA binding proteins, Arabidopsis thaliana
          Length = 563

 Score = 27.5 bits (58), Expect = 8.1
 Identities = 19/54 (35%), Positives = 30/54 (55%), Gaps = 3/54 (5%)
 Frame = +3

Query: 24  EPRLLIVLDPAQDHQPITEASYVNIPVI---ALCNTDSPLRFVDIAIPCNTKSS 176
           +PR+  +  P+ DH+ IT AS  N PV     L  +   +R VD+ I C+ +S+
Sbjct: 271 QPRIDYLPHPSYDHRLITSAS-KNPPVTIKQPLQASKDDIRQVDLKILCSNESA 323


>At5g02270.1 68418.m00150 ABC transporter family protein NBD-like
           protein POP, Arabidopsis thaliana, EMBL:AF127664
          Length = 328

 Score = 27.5 bits (58), Expect = 8.1
 Identities = 13/38 (34%), Positives = 16/38 (42%)
 Frame = +3

Query: 477 KKNGLPRYKMREHNCRRTSSRHRSALVGWIRSRLECCI 590
           K NGLP ++ R    R T    R    GW   RL   +
Sbjct: 275 KANGLPEFETRTEESRVTGDPARMLNNGWAAGRLHSTV 312


>At3g54570.1 68416.m06038 calmodulin-binding protein-related
           contains similarity to potato calmodulin-binding protein
           PCBP GI:17933110 from [Solanum tuberosum]
          Length = 417

 Score = 27.5 bits (58), Expect = 8.1
 Identities = 9/16 (56%), Positives = 13/16 (81%)
 Frame = -2

Query: 182 RVGRLGVAWDSNVHKS 135
           R GR+G  WD+NVH++
Sbjct: 107 RSGRIGRCWDANVHRA 122


>At2g02640.1 68415.m00203 DC1 domain-containing protein   contains
           Pfam profile PF03107: DC1 domain
          Length = 627

 Score = 27.5 bits (58), Expect = 8.1
 Identities = 15/37 (40%), Positives = 24/37 (64%), Gaps = 1/37 (2%)
 Frame = -3

Query: 283 VEEQI-NHNIPRWSRGSTPRSLNTSRANNHHIKPIEW 176
           VE+++ NH + ++S  S+P    TS  NNHH+ P+ W
Sbjct: 71  VEDEVTNHILSKYS--SSPLFDETS--NNHHVLPLFW 103


>At2g02610.1 68415.m00200 DC1 domain-containing protein   contains
           Pfam profile PF03107: DC1 domain
          Length = 627

 Score = 27.5 bits (58), Expect = 8.1
 Identities = 15/37 (40%), Positives = 24/37 (64%), Gaps = 1/37 (2%)
 Frame = -3

Query: 283 VEEQI-NHNIPRWSRGSTPRSLNTSRANNHHIKPIEW 176
           VE+++ NH + ++S  S+P    TS  NNHH+ P+ W
Sbjct: 71  VEDEVTNHILSKYS--SSPLFDETS--NNHHVLPLFW 103


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,115,791
Number of Sequences: 28952
Number of extensions: 254870
Number of successful extensions: 690
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 674
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 690
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1334473344
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)