Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30682
         (747 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC330.11 |btb1||BTB/POZ domain protein Btb1|Schizosaccharomyce...    27   2.8  
SPBC1289.15 ||SPBC8E4.07c|glycoprotein |Schizosaccharomyces pomb...    26   6.6  
SPBC17G9.08c |csx2||Arf GAP protein|Schizosaccharomyces pombe|ch...    25   8.7  
SPAC1D4.05c |||Erd1 homolog|Schizosaccharomyces pombe|chr 1|||Ma...    25   8.7  
SPBC31F10.05 |mug37||sequence orphan|Schizosaccharomyces pombe|c...    25   8.7  
SPCC16C4.14c |sfc4||transcription factor TFIIIC complex subunit ...    25   8.7  
SPAC1071.06 |arp9||SWI/SNF and RSC complex subunit Arp9|Schizosa...    25   8.7  
SPBC21.07c |ppk24||serine/threonine protein kinase Ppk24|Schizos...    25   8.7  

>SPCC330.11 |btb1||BTB/POZ domain protein Btb1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1347

 Score = 27.1 bits (57), Expect = 2.8
 Identities = 12/30 (40%), Positives = 16/30 (53%)
 Frame = -2

Query: 344 GSFFV*RQYYGAPPIIRPFTSLPDMIADFM 255
           GSFF  R  Y  PPI +P   L D++   +
Sbjct: 532 GSFFAIRNDYLPPPIYKPSNMLIDLLRSLL 561


>SPBC1289.15 ||SPBC8E4.07c|glycoprotein |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1283

 Score = 25.8 bits (54), Expect = 6.6
 Identities = 10/30 (33%), Positives = 16/30 (53%)
 Frame = +3

Query: 372 LALISHASKILLHIINSRIRHFLDWQIPQE 461
           LA+ +H  K    + N  ++ FLD  +P E
Sbjct: 10  LAIFAHIGKATAKVWNRNVQGFLDLNLPNE 39


>SPBC17G9.08c |csx2||Arf GAP protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 870

 Score = 25.4 bits (53), Expect = 8.7
 Identities = 7/17 (41%), Positives = 12/17 (70%)
 Frame = +2

Query: 545 TPVILCFVDYSKAFDCV 595
           +P+ LCF +Y K  +C+
Sbjct: 161 SPIYLCFAEYDKRLNCL 177


>SPAC1D4.05c |||Erd1 homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 387

 Score = 25.4 bits (53), Expect = 8.7
 Identities = 9/36 (25%), Positives = 17/36 (47%)
 Frame = -1

Query: 357 YSLSWILFCVEAVLWSSSNHPAIHQPARYDCRFYEY 250
           Y++   +  +  V WS   HP +HQ   Y+   + +
Sbjct: 331 YAIGCFINFILRVTWSMKLHPRLHQFHEYEMGIFSF 366


>SPBC31F10.05 |mug37||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 217

 Score = 25.4 bits (53), Expect = 8.7
 Identities = 13/35 (37%), Positives = 19/35 (54%), Gaps = 2/35 (5%)
 Frame = +3

Query: 345 TKDCNNYRTLALISHASKIL--LHIINSRIRHFLD 443
           TK     R + ++SHA KIL  +HI +S +    D
Sbjct: 173 TKPATMIRVVGIVSHAEKILKVIHIASSDLDELWD 207


>SPCC16C4.14c |sfc4||transcription factor TFIIIC complex subunit
           Sfc4|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1006

 Score = 25.4 bits (53), Expect = 8.7
 Identities = 12/27 (44%), Positives = 18/27 (66%), Gaps = 2/27 (7%)
 Frame = -3

Query: 595 NAVKRLAVVNEAQDNR--CIEFVASFY 521
           NA+ +LA +NE QDNR   +E V + +
Sbjct: 501 NALIKLAEINELQDNRDAALEIVTNIF 527


>SPAC1071.06 |arp9||SWI/SNF and RSC complex subunit
           Arp9|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 523

 Score = 25.4 bits (53), Expect = 8.7
 Identities = 10/39 (25%), Positives = 23/39 (58%)
 Frame = +1

Query: 4   DPITELQLITERWRRYCESLYKNPTNDTTCSPDFVWADI 120
           +P+ +  +  ER++  CE ++  P+N+T   P+ ++  I
Sbjct: 347 EPLGDCIVGRERFK-ICEPIFHRPSNETVSLPEAIYITI 384


>SPBC21.07c |ppk24||serine/threonine protein kinase
           Ppk24|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 461

 Score = 25.4 bits (53), Expect = 8.7
 Identities = 13/30 (43%), Positives = 17/30 (56%)
 Frame = +2

Query: 335 KRIHERL*QLSDPCSYLTCK*NSVAYYQFQ 424
           K+I E++  L D C YL     +VAY Q Q
Sbjct: 221 KQIEEKVLTLEDKCCYLKQILQAVAYLQSQ 250


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,284,322
Number of Sequences: 5004
Number of extensions: 71001
Number of successful extensions: 190
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 174
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 190
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 355273338
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)