BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= wdV30682 (747 letters) Database: rice 37,544 sequences; 14,793,348 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value 06_02_0297 - 13891954-13892556,13893019-13893855,13894179-138943... 47 1e-05 07_03_1291 + 25545749-25546262,25546989-25547669,25547693-255477... 46 3e-05 07_01_0242 + 1775704-1776797,1776839-1777759,1778312-1778412,177... 45 6e-05 04_03_0582 + 17528335-17529790,17529913-17531651,17531814-175320... 42 4e-04 01_07_0353 + 42962769-42962972,42963062-42963138,42963571-429638... 32 0.56 08_02_1171 + 24880363-24881355,24882553-24882702,24883505-248842... 29 3.9 06_03_1485 + 30462009-30462098,30462212-30462340,30462416-304625... 28 6.9 05_07_0360 + 29542854-29542900,29542988-29543129,29543207-295445... 28 6.9 02_02_0078 + 6587491-6588021,6588160-6589151,6592430-6592607,659... 28 6.9 >06_02_0297 - 13891954-13892556,13893019-13893855,13894179-13894394, 13895455-13895874,13896198-13896506 Length = 794 Score = 47.2 bits (107), Expect = 1e-05 Identities = 21/77 (27%), Positives = 40/77 (51%) Frame = +2 Query: 515 QLIERCYEFDTPVILCFVDYSKAFDCVGWNCLWRVLQELGVPMHLIALLQSLYYGSQGTV 694 + I +C + ++L +D+ KAFD + + + V+Q +G P+ I +Q ++ + V Sbjct: 439 EYIHQCQQSKREIVLLKLDFEKAFDTIEHSAILSVMQHMGFPLKWIEWVQMVFSTASSAV 498 Query: 695 RVDNTMSKRFNFRRGVR 745 ++ F RRGVR Sbjct: 499 LLNGVPGNSFKCRRGVR 515 Score = 32.7 bits (71), Expect = 0.32 Identities = 16/59 (27%), Positives = 33/59 (55%) Frame = +3 Query: 309 SSIILPLHKKGSTKDCNNYRTLALISHASKILLHIINSRIRHFLDWQIPQEQAGFVKGR 485 SS I + KK S + N++R ++L+ + KI+ ++ R++ + + GF+KG+ Sbjct: 370 SSFITLVPKKTSLETVNDFRPISLMGISLKIVTKLLAGRLQGVILKLVSDNHYGFIKGK 428 >07_03_1291 + 25545749-25546262,25546989-25547669,25547693-25547751, 25549152-25549242,25549330-25549743,25550191-25550243, 25550947-25551177,25551492-25551708,25551790-25551890, 25552446-25552532,25553536-25553676,25553839-25553961, 25554070-25554522,25554931-25555308,25555410-25556060, 25556264-25556368,25556482-25556707,25557204-25557241 Length = 1520 Score = 46.0 bits (104), Expect = 3e-05 Identities = 21/77 (27%), Positives = 42/77 (54%) Frame = +2 Query: 515 QLIERCYEFDTPVILCFVDYSKAFDCVGWNCLWRVLQELGVPMHLIALLQSLYYGSQGTV 694 +LI+ C+ ++ +D++KAFD V W L+++L G P + I+ +++L S+ V Sbjct: 24 ELIQACHARKCQTLIIKLDFAKAFDSVNWQSLFQILSVKGFPDNWISWIKNLLQTSKSAV 83 Query: 695 RVDNTMSKRFNFRRGVR 745 + K ++G+R Sbjct: 84 LLHGIPGKWITCKKGLR 100 >07_01_0242 + 1775704-1776797,1776839-1777759,1778312-1778412, 1778770-1778900,1779530-1779788,1779823-1780098, 1780100-1781352 Length = 1344 Score = 45.2 bits (102), Expect = 6e-05 Identities = 21/76 (27%), Positives = 42/76 (55%) Frame = +2 Query: 515 QLIERCYEFDTPVILCFVDYSKAFDCVGWNCLWRVLQELGVPMHLIALLQSLYYGSQGTV 694 +LI+ CY I+ +D++KAFD V W+ L+++L G P + I+ ++ L S+ V Sbjct: 1039 ELIQACYRRKCQTIIVKLDFTKAFDSVIWSSLFKILAVRGFPENWISWIKGLLSSSKSAV 1098 Query: 695 RVDNTMSKRFNFRRGV 742 ++ + ++G+ Sbjct: 1099 LLNGVPGRWICCKKGL 1114 Score = 36.3 bits (80), Expect = 0.026 Identities = 20/67 (29%), Positives = 37/67 (55%) Frame = +3 Query: 306 RSSIILPLHKKGSTKDCNNYRTLALISHASKILLHIINSRIRHFLDWQIPQEQAGFVKGR 485 R+ I+L + K G + YR ++L + + KIL ++ +R++ I +Q GF+KGR Sbjct: 970 RAYIVL-IQKPGKENTVDGYRPISLQNCSVKILSKVLATRLQRVFLRMIHLDQTGFLKGR 1028 Query: 486 GTREQIL 506 E ++ Sbjct: 1029 CISENLI 1035 >04_03_0582 + 17528335-17529790,17529913-17531651,17531814-17532035, 17532062-17533525 Length = 1626 Score = 42.3 bits (95), Expect = 4e-04 Identities = 20/72 (27%), Positives = 41/72 (56%) Frame = +3 Query: 270 HIWQAGEWPDDWRSSIILPLHKKGSTKDCNNYRTLALISHASKILLHIINSRIRHFLDWQ 449 + +Q+G P+ + I+ + KK D +YR ++L + K++ + +R+R LD Sbjct: 936 NFFQSGLMPEGVNDTAIVLIPKKDQPIDLKDYRPISLCNVVYKVVSKCLVNRLRPILDDL 995 Query: 450 IPQEQAGFVKGR 485 + +EQ+ F++GR Sbjct: 996 VSKEQSAFIQGR 1007 >01_07_0353 + 42962769-42962972,42963062-42963138,42963571-42963817, 42963907-42964476,42964998-42965171,42965514-42965640, 42965719-42965828,42966707-42966907,42966999-42967966, 42968110-42968358,42968760-42969105 Length = 1090 Score = 31.9 bits (69), Expect = 0.56 Identities = 14/60 (23%), Positives = 33/60 (55%), Gaps = 1/60 (1%) Frame = -2 Query: 260 FMSTSIPA-SLSALRVSAVILSCPGALLSFSFFKAALISECNMDGS*TISAQTKSGLQVV 84 F++ ++ A +L A ++ ++ SC G LL+ F+++++ N DG + Q ++ + Sbjct: 434 FVADTVAAIALCAQKLPSITTSCLGGLLALVFYESSISDSANFDGEAAVLVQAILSIKAI 493 >08_02_1171 + 24880363-24881355,24882553-24882702,24883505-24884210, 24885012-24885404,24885759-24885805,24886088-24886111 Length = 770 Score = 29.1 bits (62), Expect = 3.9 Identities = 14/37 (37%), Positives = 22/37 (59%), Gaps = 1/37 (2%) Frame = -3 Query: 718 F*HSVVDPYSALTAIVKGLEKSYKVHGYS-EFLKDPP 611 F H+++ P TA+ KGL +S+ G S E L++ P Sbjct: 407 FRHAILSPLGYETALFKGLSESFSCEGASAESLREKP 443 >06_03_1485 + 30462009-30462098,30462212-30462340,30462416-30462520, 30462626-30462706,30462885-30463000,30463083-30463184, 30463298-30463417,30463678-30463748,30463805-30463899, 30464001-30464075,30464130-30464219,30464687-30464794 Length = 393 Score = 28.3 bits (60), Expect = 6.9 Identities = 9/26 (34%), Positives = 14/26 (53%) Frame = +2 Query: 584 FDCVGWNCLWRVLQELGVPMHLIALL 661 F W C+W ++Q + PM L L+ Sbjct: 257 FSREAWTCVWHMIQAINEPMELYMLI 282 >05_07_0360 + 29542854-29542900,29542988-29543129,29543207-29544529, 29544642-29544715,29545850-29545964,29546682-29546714 Length = 577 Score = 28.3 bits (60), Expect = 6.9 Identities = 13/36 (36%), Positives = 22/36 (61%) Frame = -2 Query: 275 DMIADFMSTSIPASLSALRVSAVILSCPGALLSFSF 168 D + D ++ + A L LR +A + SC G+LLS ++ Sbjct: 427 DAVLDCLNPLVQALLLPLRFAASLASCAGSLLSNTY 462 >02_02_0078 + 6587491-6588021,6588160-6589151,6592430-6592607, 6592635-6592794,6592992-6593158,6593246-6593869 Length = 883 Score = 28.3 bits (60), Expect = 6.9 Identities = 15/66 (22%), Positives = 28/66 (42%) Frame = +2 Query: 548 PVILCFVDYSKAFDCVGWNCLWRVLQELGVPMHLIALLQSLYYGSQGTVRVDNTMSKRFN 727 P +D KA+D + W+ L L LG I + ++ +R++ ++ Sbjct: 251 PFFALKIDMMKAYDRIEWSYLHGCLMRLGFEQDWINTVMRCVTSTRYAIRINGELTDTVV 310 Query: 728 FRRGVR 745 RG+R Sbjct: 311 PSRGIR 316 Database: rice Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 14,793,348 Number of sequences in database: 37,544 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 21,241,266 Number of Sequences: 37544 Number of extensions: 463393 Number of successful extensions: 1115 Number of sequences better than 10.0: 9 Number of HSP's better than 10.0 without gapping: 1083 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1115 length of database: 14,793,348 effective HSP length: 80 effective length of database: 11,789,828 effective search space used: 1980691104 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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