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Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30682
         (747 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_02_0297 - 13891954-13892556,13893019-13893855,13894179-138943...    47   1e-05
07_03_1291 + 25545749-25546262,25546989-25547669,25547693-255477...    46   3e-05
07_01_0242 + 1775704-1776797,1776839-1777759,1778312-1778412,177...    45   6e-05
04_03_0582 + 17528335-17529790,17529913-17531651,17531814-175320...    42   4e-04
01_07_0353 + 42962769-42962972,42963062-42963138,42963571-429638...    32   0.56 
08_02_1171 + 24880363-24881355,24882553-24882702,24883505-248842...    29   3.9  
06_03_1485 + 30462009-30462098,30462212-30462340,30462416-304625...    28   6.9  
05_07_0360 + 29542854-29542900,29542988-29543129,29543207-295445...    28   6.9  
02_02_0078 + 6587491-6588021,6588160-6589151,6592430-6592607,659...    28   6.9  

>06_02_0297 -
           13891954-13892556,13893019-13893855,13894179-13894394,
           13895455-13895874,13896198-13896506
          Length = 794

 Score = 47.2 bits (107), Expect = 1e-05
 Identities = 21/77 (27%), Positives = 40/77 (51%)
 Frame = +2

Query: 515 QLIERCYEFDTPVILCFVDYSKAFDCVGWNCLWRVLQELGVPMHLIALLQSLYYGSQGTV 694
           + I +C +    ++L  +D+ KAFD +  + +  V+Q +G P+  I  +Q ++  +   V
Sbjct: 439 EYIHQCQQSKREIVLLKLDFEKAFDTIEHSAILSVMQHMGFPLKWIEWVQMVFSTASSAV 498

Query: 695 RVDNTMSKRFNFRRGVR 745
            ++      F  RRGVR
Sbjct: 499 LLNGVPGNSFKCRRGVR 515



 Score = 32.7 bits (71), Expect = 0.32
 Identities = 16/59 (27%), Positives = 33/59 (55%)
 Frame = +3

Query: 309 SSIILPLHKKGSTKDCNNYRTLALISHASKILLHIINSRIRHFLDWQIPQEQAGFVKGR 485
           SS I  + KK S +  N++R ++L+  + KI+  ++  R++  +   +     GF+KG+
Sbjct: 370 SSFITLVPKKTSLETVNDFRPISLMGISLKIVTKLLAGRLQGVILKLVSDNHYGFIKGK 428


>07_03_1291 +
           25545749-25546262,25546989-25547669,25547693-25547751,
           25549152-25549242,25549330-25549743,25550191-25550243,
           25550947-25551177,25551492-25551708,25551790-25551890,
           25552446-25552532,25553536-25553676,25553839-25553961,
           25554070-25554522,25554931-25555308,25555410-25556060,
           25556264-25556368,25556482-25556707,25557204-25557241
          Length = 1520

 Score = 46.0 bits (104), Expect = 3e-05
 Identities = 21/77 (27%), Positives = 42/77 (54%)
 Frame = +2

Query: 515 QLIERCYEFDTPVILCFVDYSKAFDCVGWNCLWRVLQELGVPMHLIALLQSLYYGSQGTV 694
           +LI+ C+      ++  +D++KAFD V W  L+++L   G P + I+ +++L   S+  V
Sbjct: 24  ELIQACHARKCQTLIIKLDFAKAFDSVNWQSLFQILSVKGFPDNWISWIKNLLQTSKSAV 83

Query: 695 RVDNTMSKRFNFRRGVR 745
            +     K    ++G+R
Sbjct: 84  LLHGIPGKWITCKKGLR 100


>07_01_0242 + 1775704-1776797,1776839-1777759,1778312-1778412,
            1778770-1778900,1779530-1779788,1779823-1780098,
            1780100-1781352
          Length = 1344

 Score = 45.2 bits (102), Expect = 6e-05
 Identities = 21/76 (27%), Positives = 42/76 (55%)
 Frame = +2

Query: 515  QLIERCYEFDTPVILCFVDYSKAFDCVGWNCLWRVLQELGVPMHLIALLQSLYYGSQGTV 694
            +LI+ CY      I+  +D++KAFD V W+ L+++L   G P + I+ ++ L   S+  V
Sbjct: 1039 ELIQACYRRKCQTIIVKLDFTKAFDSVIWSSLFKILAVRGFPENWISWIKGLLSSSKSAV 1098

Query: 695  RVDNTMSKRFNFRRGV 742
             ++    +    ++G+
Sbjct: 1099 LLNGVPGRWICCKKGL 1114



 Score = 36.3 bits (80), Expect = 0.026
 Identities = 20/67 (29%), Positives = 37/67 (55%)
 Frame = +3

Query: 306  RSSIILPLHKKGSTKDCNNYRTLALISHASKILLHIINSRIRHFLDWQIPQEQAGFVKGR 485
            R+ I+L + K G     + YR ++L + + KIL  ++ +R++      I  +Q GF+KGR
Sbjct: 970  RAYIVL-IQKPGKENTVDGYRPISLQNCSVKILSKVLATRLQRVFLRMIHLDQTGFLKGR 1028

Query: 486  GTREQIL 506
               E ++
Sbjct: 1029 CISENLI 1035


>04_03_0582 + 17528335-17529790,17529913-17531651,17531814-17532035,
            17532062-17533525
          Length = 1626

 Score = 42.3 bits (95), Expect = 4e-04
 Identities = 20/72 (27%), Positives = 41/72 (56%)
 Frame = +3

Query: 270  HIWQAGEWPDDWRSSIILPLHKKGSTKDCNNYRTLALISHASKILLHIINSRIRHFLDWQ 449
            + +Q+G  P+    + I+ + KK    D  +YR ++L +   K++   + +R+R  LD  
Sbjct: 936  NFFQSGLMPEGVNDTAIVLIPKKDQPIDLKDYRPISLCNVVYKVVSKCLVNRLRPILDDL 995

Query: 450  IPQEQAGFVKGR 485
            + +EQ+ F++GR
Sbjct: 996  VSKEQSAFIQGR 1007


>01_07_0353 +
           42962769-42962972,42963062-42963138,42963571-42963817,
           42963907-42964476,42964998-42965171,42965514-42965640,
           42965719-42965828,42966707-42966907,42966999-42967966,
           42968110-42968358,42968760-42969105
          Length = 1090

 Score = 31.9 bits (69), Expect = 0.56
 Identities = 14/60 (23%), Positives = 33/60 (55%), Gaps = 1/60 (1%)
 Frame = -2

Query: 260 FMSTSIPA-SLSALRVSAVILSCPGALLSFSFFKAALISECNMDGS*TISAQTKSGLQVV 84
           F++ ++ A +L A ++ ++  SC G LL+  F+++++    N DG   +  Q    ++ +
Sbjct: 434 FVADTVAAIALCAQKLPSITTSCLGGLLALVFYESSISDSANFDGEAAVLVQAILSIKAI 493


>08_02_1171 +
           24880363-24881355,24882553-24882702,24883505-24884210,
           24885012-24885404,24885759-24885805,24886088-24886111
          Length = 770

 Score = 29.1 bits (62), Expect = 3.9
 Identities = 14/37 (37%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
 Frame = -3

Query: 718 F*HSVVDPYSALTAIVKGLEKSYKVHGYS-EFLKDPP 611
           F H+++ P    TA+ KGL +S+   G S E L++ P
Sbjct: 407 FRHAILSPLGYETALFKGLSESFSCEGASAESLREKP 443


>06_03_1485 +
           30462009-30462098,30462212-30462340,30462416-30462520,
           30462626-30462706,30462885-30463000,30463083-30463184,
           30463298-30463417,30463678-30463748,30463805-30463899,
           30464001-30464075,30464130-30464219,30464687-30464794
          Length = 393

 Score = 28.3 bits (60), Expect = 6.9
 Identities = 9/26 (34%), Positives = 14/26 (53%)
 Frame = +2

Query: 584 FDCVGWNCLWRVLQELGVPMHLIALL 661
           F    W C+W ++Q +  PM L  L+
Sbjct: 257 FSREAWTCVWHMIQAINEPMELYMLI 282


>05_07_0360 +
           29542854-29542900,29542988-29543129,29543207-29544529,
           29544642-29544715,29545850-29545964,29546682-29546714
          Length = 577

 Score = 28.3 bits (60), Expect = 6.9
 Identities = 13/36 (36%), Positives = 22/36 (61%)
 Frame = -2

Query: 275 DMIADFMSTSIPASLSALRVSAVILSCPGALLSFSF 168
           D + D ++  + A L  LR +A + SC G+LLS ++
Sbjct: 427 DAVLDCLNPLVQALLLPLRFAASLASCAGSLLSNTY 462


>02_02_0078 +
           6587491-6588021,6588160-6589151,6592430-6592607,
           6592635-6592794,6592992-6593158,6593246-6593869
          Length = 883

 Score = 28.3 bits (60), Expect = 6.9
 Identities = 15/66 (22%), Positives = 28/66 (42%)
 Frame = +2

Query: 548 PVILCFVDYSKAFDCVGWNCLWRVLQELGVPMHLIALLQSLYYGSQGTVRVDNTMSKRFN 727
           P     +D  KA+D + W+ L   L  LG     I  +      ++  +R++  ++    
Sbjct: 251 PFFALKIDMMKAYDRIEWSYLHGCLMRLGFEQDWINTVMRCVTSTRYAIRINGELTDTVV 310

Query: 728 FRRGVR 745
             RG+R
Sbjct: 311 PSRGIR 316


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,241,266
Number of Sequences: 37544
Number of extensions: 463393
Number of successful extensions: 1115
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1083
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1115
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1980691104
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

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