Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV30682
(747 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_02_0297 - 13891954-13892556,13893019-13893855,13894179-138943... 47 1e-05
07_03_1291 + 25545749-25546262,25546989-25547669,25547693-255477... 46 3e-05
07_01_0242 + 1775704-1776797,1776839-1777759,1778312-1778412,177... 45 6e-05
04_03_0582 + 17528335-17529790,17529913-17531651,17531814-175320... 42 4e-04
01_07_0353 + 42962769-42962972,42963062-42963138,42963571-429638... 32 0.56
08_02_1171 + 24880363-24881355,24882553-24882702,24883505-248842... 29 3.9
06_03_1485 + 30462009-30462098,30462212-30462340,30462416-304625... 28 6.9
05_07_0360 + 29542854-29542900,29542988-29543129,29543207-295445... 28 6.9
02_02_0078 + 6587491-6588021,6588160-6589151,6592430-6592607,659... 28 6.9
>06_02_0297 -
13891954-13892556,13893019-13893855,13894179-13894394,
13895455-13895874,13896198-13896506
Length = 794
Score = 47.2 bits (107), Expect = 1e-05
Identities = 21/77 (27%), Positives = 40/77 (51%)
Frame = +2
Query: 515 QLIERCYEFDTPVILCFVDYSKAFDCVGWNCLWRVLQELGVPMHLIALLQSLYYGSQGTV 694
+ I +C + ++L +D+ KAFD + + + V+Q +G P+ I +Q ++ + V
Sbjct: 439 EYIHQCQQSKREIVLLKLDFEKAFDTIEHSAILSVMQHMGFPLKWIEWVQMVFSTASSAV 498
Query: 695 RVDNTMSKRFNFRRGVR 745
++ F RRGVR
Sbjct: 499 LLNGVPGNSFKCRRGVR 515
Score = 32.7 bits (71), Expect = 0.32
Identities = 16/59 (27%), Positives = 33/59 (55%)
Frame = +3
Query: 309 SSIILPLHKKGSTKDCNNYRTLALISHASKILLHIINSRIRHFLDWQIPQEQAGFVKGR 485
SS I + KK S + N++R ++L+ + KI+ ++ R++ + + GF+KG+
Sbjct: 370 SSFITLVPKKTSLETVNDFRPISLMGISLKIVTKLLAGRLQGVILKLVSDNHYGFIKGK 428
>07_03_1291 +
25545749-25546262,25546989-25547669,25547693-25547751,
25549152-25549242,25549330-25549743,25550191-25550243,
25550947-25551177,25551492-25551708,25551790-25551890,
25552446-25552532,25553536-25553676,25553839-25553961,
25554070-25554522,25554931-25555308,25555410-25556060,
25556264-25556368,25556482-25556707,25557204-25557241
Length = 1520
Score = 46.0 bits (104), Expect = 3e-05
Identities = 21/77 (27%), Positives = 42/77 (54%)
Frame = +2
Query: 515 QLIERCYEFDTPVILCFVDYSKAFDCVGWNCLWRVLQELGVPMHLIALLQSLYYGSQGTV 694
+LI+ C+ ++ +D++KAFD V W L+++L G P + I+ +++L S+ V
Sbjct: 24 ELIQACHARKCQTLIIKLDFAKAFDSVNWQSLFQILSVKGFPDNWISWIKNLLQTSKSAV 83
Query: 695 RVDNTMSKRFNFRRGVR 745
+ K ++G+R
Sbjct: 84 LLHGIPGKWITCKKGLR 100
>07_01_0242 + 1775704-1776797,1776839-1777759,1778312-1778412,
1778770-1778900,1779530-1779788,1779823-1780098,
1780100-1781352
Length = 1344
Score = 45.2 bits (102), Expect = 6e-05
Identities = 21/76 (27%), Positives = 42/76 (55%)
Frame = +2
Query: 515 QLIERCYEFDTPVILCFVDYSKAFDCVGWNCLWRVLQELGVPMHLIALLQSLYYGSQGTV 694
+LI+ CY I+ +D++KAFD V W+ L+++L G P + I+ ++ L S+ V
Sbjct: 1039 ELIQACYRRKCQTIIVKLDFTKAFDSVIWSSLFKILAVRGFPENWISWIKGLLSSSKSAV 1098
Query: 695 RVDNTMSKRFNFRRGV 742
++ + ++G+
Sbjct: 1099 LLNGVPGRWICCKKGL 1114
Score = 36.3 bits (80), Expect = 0.026
Identities = 20/67 (29%), Positives = 37/67 (55%)
Frame = +3
Query: 306 RSSIILPLHKKGSTKDCNNYRTLALISHASKILLHIINSRIRHFLDWQIPQEQAGFVKGR 485
R+ I+L + K G + YR ++L + + KIL ++ +R++ I +Q GF+KGR
Sbjct: 970 RAYIVL-IQKPGKENTVDGYRPISLQNCSVKILSKVLATRLQRVFLRMIHLDQTGFLKGR 1028
Query: 486 GTREQIL 506
E ++
Sbjct: 1029 CISENLI 1035
>04_03_0582 + 17528335-17529790,17529913-17531651,17531814-17532035,
17532062-17533525
Length = 1626
Score = 42.3 bits (95), Expect = 4e-04
Identities = 20/72 (27%), Positives = 41/72 (56%)
Frame = +3
Query: 270 HIWQAGEWPDDWRSSIILPLHKKGSTKDCNNYRTLALISHASKILLHIINSRIRHFLDWQ 449
+ +Q+G P+ + I+ + KK D +YR ++L + K++ + +R+R LD
Sbjct: 936 NFFQSGLMPEGVNDTAIVLIPKKDQPIDLKDYRPISLCNVVYKVVSKCLVNRLRPILDDL 995
Query: 450 IPQEQAGFVKGR 485
+ +EQ+ F++GR
Sbjct: 996 VSKEQSAFIQGR 1007
>01_07_0353 +
42962769-42962972,42963062-42963138,42963571-42963817,
42963907-42964476,42964998-42965171,42965514-42965640,
42965719-42965828,42966707-42966907,42966999-42967966,
42968110-42968358,42968760-42969105
Length = 1090
Score = 31.9 bits (69), Expect = 0.56
Identities = 14/60 (23%), Positives = 33/60 (55%), Gaps = 1/60 (1%)
Frame = -2
Query: 260 FMSTSIPA-SLSALRVSAVILSCPGALLSFSFFKAALISECNMDGS*TISAQTKSGLQVV 84
F++ ++ A +L A ++ ++ SC G LL+ F+++++ N DG + Q ++ +
Sbjct: 434 FVADTVAAIALCAQKLPSITTSCLGGLLALVFYESSISDSANFDGEAAVLVQAILSIKAI 493
>08_02_1171 +
24880363-24881355,24882553-24882702,24883505-24884210,
24885012-24885404,24885759-24885805,24886088-24886111
Length = 770
Score = 29.1 bits (62), Expect = 3.9
Identities = 14/37 (37%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
Frame = -3
Query: 718 F*HSVVDPYSALTAIVKGLEKSYKVHGYS-EFLKDPP 611
F H+++ P TA+ KGL +S+ G S E L++ P
Sbjct: 407 FRHAILSPLGYETALFKGLSESFSCEGASAESLREKP 443
>06_03_1485 +
30462009-30462098,30462212-30462340,30462416-30462520,
30462626-30462706,30462885-30463000,30463083-30463184,
30463298-30463417,30463678-30463748,30463805-30463899,
30464001-30464075,30464130-30464219,30464687-30464794
Length = 393
Score = 28.3 bits (60), Expect = 6.9
Identities = 9/26 (34%), Positives = 14/26 (53%)
Frame = +2
Query: 584 FDCVGWNCLWRVLQELGVPMHLIALL 661
F W C+W ++Q + PM L L+
Sbjct: 257 FSREAWTCVWHMIQAINEPMELYMLI 282
>05_07_0360 +
29542854-29542900,29542988-29543129,29543207-29544529,
29544642-29544715,29545850-29545964,29546682-29546714
Length = 577
Score = 28.3 bits (60), Expect = 6.9
Identities = 13/36 (36%), Positives = 22/36 (61%)
Frame = -2
Query: 275 DMIADFMSTSIPASLSALRVSAVILSCPGALLSFSF 168
D + D ++ + A L LR +A + SC G+LLS ++
Sbjct: 427 DAVLDCLNPLVQALLLPLRFAASLASCAGSLLSNTY 462
>02_02_0078 +
6587491-6588021,6588160-6589151,6592430-6592607,
6592635-6592794,6592992-6593158,6593246-6593869
Length = 883
Score = 28.3 bits (60), Expect = 6.9
Identities = 15/66 (22%), Positives = 28/66 (42%)
Frame = +2
Query: 548 PVILCFVDYSKAFDCVGWNCLWRVLQELGVPMHLIALLQSLYYGSQGTVRVDNTMSKRFN 727
P +D KA+D + W+ L L LG I + ++ +R++ ++
Sbjct: 251 PFFALKIDMMKAYDRIEWSYLHGCLMRLGFEQDWINTVMRCVTSTRYAIRINGELTDTVV 310
Query: 728 FRRGVR 745
RG+R
Sbjct: 311 PSRGIR 316
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,241,266
Number of Sequences: 37544
Number of extensions: 463393
Number of successful extensions: 1115
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1083
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1115
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1980691104
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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