Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV30682
(747 letters)
Database: fruitfly
53,049 sequences; 24,988,368 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AY180919-1|AAN87272.1| 884|Drosophila melanogaster ORF1 protein. 58 1e-08
AF456125-1|AAL57609.1| 832|Drosophila melanogaster reverse tran... 58 1e-08
AJ302712-2|CAC16871.1| 1227|Drosophila melanogaster pol protein. 51 2e-06
AY089343-1|AAL90081.2| 718|Drosophila melanogaster AT16518p pro... 49 6e-06
M22874-2|AAA28675.1| 916|Drosophila melanogaster protein ( D.me... 48 1e-05
AY060438-1|AAL25477.1| 906|Drosophila melanogaster LD46618p pro... 48 2e-05
U02279-1|AAA18301.1| 964|Drosophila melanogaster protein ( Dros... 46 7e-05
AY561850-2|AAS68534.1| 1080|Drosophila melanogaster pol protein ... 46 7e-05
AY035777-2|AAK77971.1| 1080|Drosophila melanogaster pol protein ... 46 7e-05
AM040245-1|CAJ13341.1| 1042|Drosophila melanogaster pol protein ... 46 7e-05
AJ566116-2|CAD92793.1| 1080|Drosophila melanogaster pol protein ... 46 7e-05
U14101-2|AAC46494.1| 1084|Drosophila melanogaster putative rever... 42 0.001
AF237761-2|AAF81411.1| 908|Drosophila melanogaster unknown prot... 41 0.002
AY060323-1|AAL25362.1| 241|Drosophila melanogaster GH20809p pro... 36 0.059
X51967-1|CAA36225.1| 1057|Drosophila melanogaster protein ( Dros... 35 0.14
X51968-2|CAA36227.1| 1021|Drosophila melanogaster protein ( Dros... 29 5.1
>AY180919-1|AAN87272.1| 884|Drosophila melanogaster ORF1 protein.
Length = 884
Score = 58.4 bits (135), Expect = 1e-08
Identities = 38/97 (39%), Positives = 52/97 (53%), Gaps = 3/97 (3%)
Frame = +3
Query: 261 ICNHIWQAGEWPDDWRSSIILPLHKKGSTKD-CNNYRTLALISHASKILLHIINSRIRHF 437
I NH QAG +P DW+ + I+P+ K G D +YR ++L+S SKIL +I R+ F
Sbjct: 503 IANHCLQAGYFPRDWKIAKIVPILKPGKPPDNPESYRPISLLSGLSKILEKLIKLRLVKF 562
Query: 438 LDWQ--IPQEQAGFVKGRGTREQILKSDN**KDATNS 542
LD +P Q GF G T LK N K++ S
Sbjct: 563 LDIHNTLPTVQYGFRNGLNTILPTLKLRNYIKESIQS 599
Score = 33.1 bits (72), Expect = 0.41
Identities = 21/78 (26%), Positives = 38/78 (48%)
Frame = +2
Query: 509 IRQLIERCYEFDTPVILCFVDYSKAFDCVGWNCLWRVLQELGVPMHLIALLQSLYYGSQG 688
+R I+ + V L +D AFD V + L L+ +G P++LI ++Q+
Sbjct: 589 LRNYIKESIQSKQSVGLVTLDIEAAFDTVWHDGLLHKLKMIGTPIYLIKIVQNFLTHRYF 648
Query: 689 TVRVDNTMSKRFNFRRGV 742
+V ++++ S R GV
Sbjct: 649 SVNLNSSQSARRILNAGV 666
>AF456125-1|AAL57609.1| 832|Drosophila melanogaster reverse
transcriptase protein.
Length = 832
Score = 58.4 bits (135), Expect = 1e-08
Identities = 38/97 (39%), Positives = 52/97 (53%), Gaps = 3/97 (3%)
Frame = +3
Query: 261 ICNHIWQAGEWPDDWRSSIILPLHKKGSTKD-CNNYRTLALISHASKILLHIINSRIRHF 437
I NH QAG +P DW+ + I+P+ K G D +YR ++L+S SKIL +I R+ F
Sbjct: 451 IANHCLQAGYFPRDWKIAKIVPILKPGKPPDNPESYRPISLLSGLSKILEKLIKLRLVKF 510
Query: 438 LDWQ--IPQEQAGFVKGRGTREQILKSDN**KDATNS 542
LD +P Q GF G T LK N K++ S
Sbjct: 511 LDIHNTLPTVQYGFRNGLNTILPTLKLRNYIKESIQS 547
Score = 33.1 bits (72), Expect = 0.41
Identities = 21/78 (26%), Positives = 38/78 (48%)
Frame = +2
Query: 509 IRQLIERCYEFDTPVILCFVDYSKAFDCVGWNCLWRVLQELGVPMHLIALLQSLYYGSQG 688
+R I+ + V L +D AFD V + L L+ +G P++LI ++Q+
Sbjct: 537 LRNYIKESIQSKQSVGLVTLDIEAAFDTVWHDGLLHKLKMIGTPIYLIKIVQNFLTHRYF 596
Query: 689 TVRVDNTMSKRFNFRRGV 742
+V ++++ S R GV
Sbjct: 597 SVNLNSSQSARRILNAGV 614
>AJ302712-2|CAC16871.1| 1227|Drosophila melanogaster pol protein.
Length = 1227
Score = 50.8 bits (116), Expect = 2e-06
Identities = 29/86 (33%), Positives = 43/86 (50%), Gaps = 3/86 (3%)
Frame = +3
Query: 261 ICNHIWQAGEWPDDWRSSIILPLHKKGS-TKDCNNYRTLALISHASKILLHIINSRIRHF 437
I N I G++P WRS+II+P+ K D N+YR ++L+S K L II R+ F
Sbjct: 478 IFNQILTTGKYPHTWRSAIIIPISKPNKPPSDINSYRPISLLSCLGKTLEKIIAQRLTWF 537
Query: 438 LDWQ--IPQEQAGFVKGRGTREQILK 509
+ I Q F T + +L+
Sbjct: 538 IKRHNLISHNQVAFKSNHSTMDALLR 563
Score = 29.1 bits (62), Expect = 6.7
Identities = 16/64 (25%), Positives = 29/64 (45%)
Frame = +2
Query: 551 VILCFVDYSKAFDCVGWNCLWRVLQELGVPMHLIALLQSLYYGSQGTVRVDNTMSKRFNF 730
V + D+ +AFD VG + + L+ G+ L L+++ VR++N S
Sbjct: 578 VSILATDFERAFDRVGIHAVLCRLERWGIGPRLYNLIKAFMTNRSFRVRINNVTSNSHIL 637
Query: 731 RRGV 742
G+
Sbjct: 638 HNGI 641
>AY089343-1|AAL90081.2| 718|Drosophila melanogaster AT16518p
protein.
Length = 718
Score = 49.2 bits (112), Expect = 6e-06
Identities = 29/84 (34%), Positives = 46/84 (54%), Gaps = 3/84 (3%)
Frame = +3
Query: 261 ICNHIWQAGEWPDDWRSSIILPLHKKGST-KDCNNYRTLALISHASKILLHIINSRIRHF 437
I N + G +P W+S+ I+ +HK G T D ++YR ++L+ KI+ +I +R+
Sbjct: 282 IFNSVLDVGYFPKAWKSASIIMIHKTGKTPTDVDSYRPISLLPSLGKIMERLILNRLLTC 341
Query: 438 LD--WQIPQEQAGFVKGRGTREQI 503
D IP+ Q GF GT EQ+
Sbjct: 342 KDVTKAIPKFQFGFRLQHGTPEQL 365
>M22874-2|AAA28675.1| 916|Drosophila melanogaster protein (
D.melanogaster LINEelement J-1, clone J-1. ).
Length = 916
Score = 48.0 bits (109), Expect = 1e-05
Identities = 29/84 (34%), Positives = 45/84 (53%), Gaps = 3/84 (3%)
Frame = +3
Query: 261 ICNHIWQAGEWPDDWRSSIILPLHKKGST-KDCNNYRTLALISHASKILLHIINSRIRHF 437
I N + G +P W+S+ I+ +HK G T D ++YR +L+ KI+ +I +R+
Sbjct: 480 IFNSVLDVGYFPKAWKSASIIMIHKTGKTPTDVDSYRPTSLLPSLGKIMERLILNRLLTC 539
Query: 438 LD--WQIPQEQAGFVKGRGTREQI 503
D IP+ Q GF GT EQ+
Sbjct: 540 KDVTKAIPKFQFGFRLQHGTPEQL 563
>AY060438-1|AAL25477.1| 906|Drosophila melanogaster LD46618p
protein.
Length = 906
Score = 47.6 bits (108), Expect = 2e-05
Identities = 26/84 (30%), Positives = 46/84 (54%), Gaps = 3/84 (3%)
Frame = +3
Query: 261 ICNHIWQAGEWPDDWRSSIILPLHKKGSTKDC-NNYRTLALISHASKILLHIINSRIRHF 437
I N I + +P W+ + IL +HK G ++ +YR ++L+S SK+ +I +R+
Sbjct: 479 IYNAILRVQFFPKQWKMAAILMIHKPGKPEESPESYRPISLLSSLSKLWERLIANRLNDI 538
Query: 438 LDWQ--IPQEQAGFVKGRGTREQI 503
+ + +P Q GF +G T EQ+
Sbjct: 539 MTERRILPDHQFGFRQGHSTVEQV 562
>U02279-1|AAA18301.1| 964|Drosophila melanogaster protein (
Drosophila melanogastertelomere-associated transposons
TART, TART-A and HeT-A,and TART-A ORF2 gene, partial
cds. ).
Length = 964
Score = 45.6 bits (103), Expect = 7e-05
Identities = 28/86 (32%), Positives = 44/86 (51%), Gaps = 3/86 (3%)
Frame = +3
Query: 261 ICNHIWQAGEWPDDWRSSIILPLHKKG-STKDCNNYRTLALISHASKILLHIINSRIRH- 434
I N I + G +PD W+ + + + K G S D +YR ++L+S SK+ ++ R+
Sbjct: 407 IYNSILRIGYYPDAWKHAQVKMILKPGKSVNDPKSYRPISLLSGLSKMFERLLLKRLFRV 466
Query: 435 -FLDWQIPQEQAGFVKGRGTREQILK 509
IP Q GF K GT +QI +
Sbjct: 467 DLFKKAIPLHQFGFRKEHGTEQQIAR 492
>AY561850-2|AAS68534.1| 1080|Drosophila melanogaster pol protein
protein.
Length = 1080
Score = 45.6 bits (103), Expect = 7e-05
Identities = 28/86 (32%), Positives = 44/86 (51%), Gaps = 3/86 (3%)
Frame = +3
Query: 261 ICNHIWQAGEWPDDWRSSIILPLHKKG-STKDCNNYRTLALISHASKILLHIINSRIRH- 434
I N I + G +PD W+ + + + K G S D +YR ++L+S SK+ ++ R+
Sbjct: 523 IYNSILRIGYYPDAWKHAQVKMILKPGKSVNDPKSYRPISLLSGLSKMFERLLLKRLFRV 582
Query: 435 -FLDWQIPQEQAGFVKGRGTREQILK 509
IP Q GF K GT +QI +
Sbjct: 583 DLFKKAIPLHQFGFRKEHGTEQQIAR 608
>AY035777-2|AAK77971.1| 1080|Drosophila melanogaster pol protein
protein.
Length = 1080
Score = 45.6 bits (103), Expect = 7e-05
Identities = 28/86 (32%), Positives = 44/86 (51%), Gaps = 3/86 (3%)
Frame = +3
Query: 261 ICNHIWQAGEWPDDWRSSIILPLHKKG-STKDCNNYRTLALISHASKILLHIINSRIRH- 434
I N I + G +PD W+ + + + K G S D +YR ++L+S SK+ ++ R+
Sbjct: 523 IYNSILRIGYYPDAWKHAQVKMILKPGKSVNDPKSYRPISLLSGLSKMFERLLLKRLFRV 582
Query: 435 -FLDWQIPQEQAGFVKGRGTREQILK 509
IP Q GF K GT +QI +
Sbjct: 583 DLFKKAIPLHQFGFRKEHGTEQQIAR 608
>AM040245-1|CAJ13341.1| 1042|Drosophila melanogaster pol protein
protein.
Length = 1042
Score = 45.6 bits (103), Expect = 7e-05
Identities = 28/86 (32%), Positives = 44/86 (51%), Gaps = 3/86 (3%)
Frame = +3
Query: 261 ICNHIWQAGEWPDDWRSSIILPLHKKG-STKDCNNYRTLALISHASKILLHIINSRIRH- 434
I N I + G +PD W+ + + + K G S D +YR ++L+S SK+ ++ R+
Sbjct: 485 IYNSILRIGYYPDAWKHAQVKMILKPGKSVNDPKSYRPISLLSGLSKMFERLLLKRLFRV 544
Query: 435 -FLDWQIPQEQAGFVKGRGTREQILK 509
IP Q GF K GT +QI +
Sbjct: 545 DLFKKAIPLHQFGFRKEHGTEQQIAR 570
>AJ566116-2|CAD92793.1| 1080|Drosophila melanogaster pol protein
protein.
Length = 1080
Score = 45.6 bits (103), Expect = 7e-05
Identities = 28/86 (32%), Positives = 44/86 (51%), Gaps = 3/86 (3%)
Frame = +3
Query: 261 ICNHIWQAGEWPDDWRSSIILPLHKKG-STKDCNNYRTLALISHASKILLHIINSRIRH- 434
I N I + G +PD W+ + + + K G S D +YR ++L+S SK+ ++ R+
Sbjct: 523 IYNSILRIGYYPDAWKHAQVKMILKPGKSVNDPKSYRPISLLSGLSKMFERLLLKRLFRV 582
Query: 435 -FLDWQIPQEQAGFVKGRGTREQILK 509
IP Q GF K GT +QI +
Sbjct: 583 DLFKKAIPLHQFGFRKEHGTEQQIAR 608
>U14101-2|AAC46494.1| 1084|Drosophila melanogaster putative reverse
transcriptase protein.
Length = 1084
Score = 41.5 bits (93), Expect = 0.001
Identities = 26/86 (30%), Positives = 44/86 (51%), Gaps = 3/86 (3%)
Frame = +3
Query: 261 ICNHIWQAGEWPDDWRSSIILPLHKKG-STKDCNNYRTLALISHASKILLHIINSRI--R 431
I N I + G +P+ W+ + + + K G S + +YR ++L+S SKI ++ R+
Sbjct: 523 IYNSILRLGYYPEAWKHAQVKMILKPGKSANEPRSYRPISLLSGLSKIFERLLLKRLFKV 582
Query: 432 HFLDWQIPQEQAGFVKGRGTREQILK 509
IP Q GF K G+ +QI +
Sbjct: 583 DLFKKAIPLHQFGFRKEHGSEQQIAR 608
>AF237761-2|AAF81411.1| 908|Drosophila melanogaster unknown
protein.
Length = 908
Score = 41.1 bits (92), Expect = 0.002
Identities = 26/84 (30%), Positives = 43/84 (51%), Gaps = 3/84 (3%)
Frame = +3
Query: 261 ICNHIWQAGEWPDDWRSSIILPLHKKGS-TKDCNNYRTLALISHASKILLHIINSRIRHF 437
+ N I + +P W+ II +HK G ++ +YR ++L+ SK+ +I RI
Sbjct: 478 VFNAIVRLQYFPYQWKLGIISMIHKPGKPEREPASYRPISLLPSISKVFERLIAVRIVSI 537
Query: 438 LDWQ--IPQEQAGFVKGRGTREQI 503
++ Q P+ Q GF G T EQ+
Sbjct: 538 MEAQGITPEHQFGFRAGHCTVEQL 561
Score = 29.5 bits (63), Expect = 5.1
Identities = 13/18 (72%), Positives = 14/18 (77%)
Frame = +1
Query: 178 DNKAPGHDKITAETLKAL 231
+NKAPGHD I TLKAL
Sbjct: 450 NNKAPGHDVICNATLKAL 467
>AY060323-1|AAL25362.1| 241|Drosophila melanogaster GH20809p
protein.
Length = 241
Score = 35.9 bits (79), Expect = 0.059
Identities = 24/81 (29%), Positives = 38/81 (46%), Gaps = 2/81 (2%)
Frame = +3
Query: 267 NHIWQAGEWPDDWRSSIILPLHKKGSTKDCNNYRTLALISHASKILLHIINSRIRHFLDW 446
N I + G +P W+ SII+ + K K +YR ++L++ SK+ + RI L
Sbjct: 18 NAITKIGYFPQKWKKSIIIMIPKPEKDKTQPSYRPISLLTCLSKLFEKGLLLRISPHLKT 77
Query: 447 Q--IPQEQAGFVKGRGTREQI 503
+P Q F G EQ+
Sbjct: 78 HNTLPSYQFDFPAKHGAIEQV 98
>X51967-1|CAA36225.1| 1057|Drosophila melanogaster protein (
Drosophila melanogasterDNA for type II retrotransposable
element R2Dm. ).
Length = 1057
Score = 34.7 bits (76), Expect = 0.14
Identities = 18/60 (30%), Positives = 30/60 (50%)
Frame = +2
Query: 566 VDYSKAFDCVGWNCLWRVLQELGVPMHLIALLQSLYYGSQGTVRVDNTMSKRFNFRRGVR 745
+D SKAFD + ++ L+ G P + +Q+ Y G ++ D S+ F RGV+
Sbjct: 481 LDVSKAFDSLSHASIYDTLRAYGAPKGFVDYVQNTYEGGGTSLNGDGWSSEEFVPARGVK 540
>X51968-2|CAA36227.1| 1021|Drosophila melanogaster protein (
Drosophila melanogasterDNA for type I retrotransposable
element R1Dm. ).
Length = 1021
Score = 29.5 bits (63), Expect = 5.1
Identities = 17/49 (34%), Positives = 25/49 (51%)
Frame = +2
Query: 551 VILCFVDYSKAFDCVGWNCLWRVLQELGVPMHLIALLQSLYYGSQGTVR 697
V+ FVD+ AFD V W+ L +LG + L QS + G + +R
Sbjct: 572 VLGTFVDFKGAFDNVEWSAALSRLADLG--CREMGLWQSFFSGRRAVIR 618
Database: fruitfly
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 24,988,368
Number of sequences in database: 53,049
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 35,615,544
Number of Sequences: 53049
Number of extensions: 790229
Number of successful extensions: 1812
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 1677
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1808
length of database: 24,988,368
effective HSP length: 83
effective length of database: 20,585,301
effective search space used: 3396574665
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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