Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV30682
(747 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U58735-1|AAC48148.1| 891|Caenorhabditis elegans Hypothetical pr... 45 5e-05
AF054983-1|AAC72298.1| 1066|Caenorhabditis elegans reverse trans... 45 5e-05
AF025462-7|AAB71003.1| 805|Caenorhabditis elegans Hypothetical ... 45 5e-05
AC087794-3|AAG53700.1| 417|Caenorhabditis elegans Hypothetical ... 36 0.040
Z35639-1|CAA84693.1| 1792|Caenorhabditis elegans Hypothetical pr... 29 3.5
AL021171-4|CAA15959.1| 409|Caenorhabditis elegans Hypothetical ... 29 3.5
AF016663-5|AAC70880.1| 864|Caenorhabditis elegans Hypothetical ... 29 4.6
Z74475-3|CAA98957.2| 567|Caenorhabditis elegans Hypothetical pr... 28 6.1
AF125964-4|ABA03109.1| 414|Caenorhabditis elegans Hypothetical ... 28 6.1
AF047655-3|ABD63244.1| 414|Caenorhabditis elegans Hypothetical ... 28 6.1
AF025465-11|AAB71024.1| 411|Caenorhabditis elegans Hypothetical... 28 6.1
AF016422-3|AAG24173.1| 411|Caenorhabditis elegans Hypothetical ... 28 6.1
U01183-1|AAC03567.1| 1257|Caenorhabditis elegans flightless-I ho... 28 8.1
L07143-3|AAB37088.2| 1257|Caenorhabditis elegans Fli-i (drosophi... 28 8.1
AL117206-11|CAB60453.3| 1237|Caenorhabditis elegans Hypothetical... 28 8.1
>U58735-1|AAC48148.1| 891|Caenorhabditis elegans Hypothetical
protein F20B4.7 protein.
Length = 891
Score = 45.2 bits (102), Expect = 5e-05
Identities = 23/70 (32%), Positives = 36/70 (51%)
Frame = +3
Query: 294 PDDWRSSIILPLHKKGSTKDCNNYRTLALISHASKILLHIINSRIRHFLDWQIPQEQAGF 473
P W++S + KKG ++ NYR + L+ K+ + +R+R LD P EQAGF
Sbjct: 429 PKPWKTSKTTLIFKKGDRENLENYRPICLLPVLYKVFTKCLLNRMRRSLDEAQPVEQAGF 488
Query: 474 VKGRGTREQI 503
+ T + I
Sbjct: 489 RRSFSTIDHI 498
Score = 43.6 bits (98), Expect = 2e-04
Identities = 20/55 (36%), Positives = 31/55 (56%)
Frame = +2
Query: 509 IRQLIERCYEFDTPVILCFVDYSKAFDCVGWNCLWRVLQELGVPMHLIALLQSLY 673
+++L+E E+ P+ L F+D+ KAFD V +W+ L E G I LL+ Y
Sbjct: 501 LQRLLEVGREYQIPLTLVFIDFKKAFDTVEHQAIWKSLDEQGADGAYIDLLKECY 555
>AF054983-1|AAC72298.1| 1066|Caenorhabditis elegans reverse
transcriptase protein.
Length = 1066
Score = 45.2 bits (102), Expect = 5e-05
Identities = 23/70 (32%), Positives = 36/70 (51%)
Frame = +3
Query: 294 PDDWRSSIILPLHKKGSTKDCNNYRTLALISHASKILLHIINSRIRHFLDWQIPQEQAGF 473
P W++S + KKG ++ NYR + L+ K+ + +R+R LD P EQAGF
Sbjct: 600 PKPWKTSKTTLIFKKGDRENLENYRPICLLPVLYKVFTKCLLNRMRRSLDEAQPVEQAGF 659
Query: 474 VKGRGTREQI 503
+ T + I
Sbjct: 660 RRSFSTIDHI 669
Score = 43.6 bits (98), Expect = 2e-04
Identities = 20/55 (36%), Positives = 31/55 (56%)
Frame = +2
Query: 509 IRQLIERCYEFDTPVILCFVDYSKAFDCVGWNCLWRVLQELGVPMHLIALLQSLY 673
+++L+E E+ P+ L F+D+ KAFD V +W+ L E G I LL+ Y
Sbjct: 672 LQRLLEVGREYQIPLTLVFIDFKKAFDSVEHQAIWKSLDEQGADGAYIDLLKECY 726
>AF025462-7|AAB71003.1| 805|Caenorhabditis elegans Hypothetical
protein K10F12.5 protein.
Length = 805
Score = 45.2 bits (102), Expect = 5e-05
Identities = 23/70 (32%), Positives = 36/70 (51%)
Frame = +3
Query: 294 PDDWRSSIILPLHKKGSTKDCNNYRTLALISHASKILLHIINSRIRHFLDWQIPQEQAGF 473
P W++S + KKG ++ NYR + L+ K+ + +R+R LD P EQAGF
Sbjct: 339 PKPWKTSKTTLIFKKGDRENLENYRPICLLPVLYKVFTKCLLNRMRRSLDEAQPVEQAGF 398
Query: 474 VKGRGTREQI 503
+ T + I
Sbjct: 399 RRSFSTIDHI 408
Score = 43.6 bits (98), Expect = 2e-04
Identities = 20/55 (36%), Positives = 31/55 (56%)
Frame = +2
Query: 509 IRQLIERCYEFDTPVILCFVDYSKAFDCVGWNCLWRVLQELGVPMHLIALLQSLY 673
+++L+E E+ P+ L F+D+ KAFD V +W+ L E G I LL+ Y
Sbjct: 411 LQRLLEVGREYQIPLTLVFIDFKKAFDSVEHQAIWKSLDEQGADGAYIDLLKECY 465
>AC087794-3|AAG53700.1| 417|Caenorhabditis elegans Hypothetical
protein Y32G9A.9 protein.
Length = 417
Score = 35.5 bits (78), Expect = 0.040
Identities = 16/39 (41%), Positives = 21/39 (53%)
Frame = +2
Query: 557 LCFVDYSKAFDCVGWNCLWRVLQELGVPMHLIALLQSLY 673
L F+D+ KAFD V +W+ L E G I LL+ Y
Sbjct: 39 LVFIDFKKAFDSVEHQAIWKSLDEQGADEAYIDLLKECY 77
>Z35639-1|CAA84693.1| 1792|Caenorhabditis elegans Hypothetical protein
D2045.2 protein.
Length = 1792
Score = 29.1 bits (62), Expect = 3.5
Identities = 17/36 (47%), Positives = 22/36 (61%)
Frame = +1
Query: 202 KITAETLKALSDAGIDVLIKSAIISGRLVNGRMIGG 309
++T E LK DAGIDV KSA+ +NGR+ G
Sbjct: 1513 RVTFENLK--KDAGIDVAKKSALSLRDTLNGRIWDG 1546
>AL021171-4|CAA15959.1| 409|Caenorhabditis elegans Hypothetical
protein H04D03.3 protein.
Length = 409
Score = 29.1 bits (62), Expect = 3.5
Identities = 17/36 (47%), Positives = 22/36 (61%)
Frame = +1
Query: 202 KITAETLKALSDAGIDVLIKSAIISGRLVNGRMIGG 309
++T E LK DAGIDV KSA+ +NGR+ G
Sbjct: 130 RVTFENLK--KDAGIDVAKKSALSLRDTLNGRIWDG 163
>AF016663-5|AAC70880.1| 864|Caenorhabditis elegans Hypothetical
protein F21E9.5 protein.
Length = 864
Score = 28.7 bits (61), Expect = 4.6
Identities = 15/34 (44%), Positives = 18/34 (52%)
Frame = +2
Query: 572 YSKAFDCVGWNCLWRVLQELGVPMHLIALLQSLY 673
+ KAFD V +W LQ+ GV I LLQ Y
Sbjct: 467 FQKAFDSVEPEDVWDSLQQQGVQRGYINLLQECY 500
>Z74475-3|CAA98957.2| 567|Caenorhabditis elegans Hypothetical
protein R04F11.4 protein.
Length = 567
Score = 28.3 bits (60), Expect = 6.1
Identities = 13/37 (35%), Positives = 18/37 (48%)
Frame = +2
Query: 554 ILCFVDYSKAFDCVGWNCLWRVLQELGVPMHLIALLQ 664
++ FV S C+ W C W L +PM + LLQ
Sbjct: 225 VMSFVTNS-CLKCIKWACCWIRLPRRHIPMPTLELLQ 260
>AF125964-4|ABA03109.1| 414|Caenorhabditis elegans Hypothetical
protein W03G1.3 protein.
Length = 414
Score = 28.3 bits (60), Expect = 6.1
Identities = 15/59 (25%), Positives = 29/59 (49%)
Frame = +3
Query: 294 PDDWRSSIILPLHKKGSTKDCNNYRTLALISHASKILLHIINSRIRHFLDWQIPQEQAG 470
P+D+ + +L + T N + +S + I+N+ H++D+ IP+EQ G
Sbjct: 226 PNDFLNHKLLEVSSLDQTVFINVNLVFSALSIQHGSVRSIVNAMSNHWIDYLIPREQQG 284
>AF047655-3|ABD63244.1| 414|Caenorhabditis elegans Hypothetical
protein C17B7.13 protein.
Length = 414
Score = 28.3 bits (60), Expect = 6.1
Identities = 15/59 (25%), Positives = 29/59 (49%)
Frame = +3
Query: 294 PDDWRSSIILPLHKKGSTKDCNNYRTLALISHASKILLHIINSRIRHFLDWQIPQEQAG 470
P+D+ + +L + T N + +S + I+N+ H++D+ IP+EQ G
Sbjct: 226 PNDFLNHKLLEVSSLDQTVFINVNLVFSALSIQHGSVRSIVNAMSNHWIDYLIPREQQG 284
>AF025465-11|AAB71024.1| 411|Caenorhabditis elegans Hypothetical
protein K02E7.2 protein.
Length = 411
Score = 28.3 bits (60), Expect = 6.1
Identities = 15/59 (25%), Positives = 29/59 (49%)
Frame = +3
Query: 294 PDDWRSSIILPLHKKGSTKDCNNYRTLALISHASKILLHIINSRIRHFLDWQIPQEQAG 470
P+D+ + +L + T N + +S + I+N+ H++D+ IP+EQ G
Sbjct: 223 PNDFLNHKLLEVSSLDQTVFINVNLVFSALSIQHGSVRSIVNAMSNHWIDYLIPREQQG 281
>AF016422-3|AAG24173.1| 411|Caenorhabditis elegans Hypothetical
protein R09E12.5 protein.
Length = 411
Score = 28.3 bits (60), Expect = 6.1
Identities = 15/59 (25%), Positives = 29/59 (49%)
Frame = +3
Query: 294 PDDWRSSIILPLHKKGSTKDCNNYRTLALISHASKILLHIINSRIRHFLDWQIPQEQAG 470
P+D+ + +L + T N + +S + I+N+ H++D+ IP+EQ G
Sbjct: 223 PNDFLNHKLLEVSSLDQTVFINVNLVFSALSIQHGSVRSIVNAMSNHWIDYLIPREQQG 281
>U01183-1|AAC03567.1| 1257|Caenorhabditis elegans flightless-I
homolog protein.
Length = 1257
Score = 27.9 bits (59), Expect = 8.1
Identities = 14/47 (29%), Positives = 23/47 (48%)
Frame = +1
Query: 370 PLLLSHMQVKFCCILSIPESDTFWIGKSLRNRLVLSKAEVLVSRSLN 510
PL + + +FC +L E T WI ++R+ +S L + LN
Sbjct: 647 PLSVESLDPRFCFLLDAGE--TIWIWSGYKSRITVSNKARLFAERLN 691
>L07143-3|AAB37088.2| 1257|Caenorhabditis elegans Fli-i (drosophila
flightless) homologprotein 1 protein.
Length = 1257
Score = 27.9 bits (59), Expect = 8.1
Identities = 14/47 (29%), Positives = 23/47 (48%)
Frame = +1
Query: 370 PLLLSHMQVKFCCILSIPESDTFWIGKSLRNRLVLSKAEVLVSRSLN 510
PL + + +FC +L E T WI ++R+ +S L + LN
Sbjct: 647 PLSVESLDPRFCFLLDAGE--TIWIWSGYKSRITVSNKARLFAERLN 691
>AL117206-11|CAB60453.3| 1237|Caenorhabditis elegans Hypothetical
protein Y67A10A.3 protein.
Length = 1237
Score = 27.9 bits (59), Expect = 8.1
Identities = 18/40 (45%), Positives = 21/40 (52%), Gaps = 1/40 (2%)
Frame = +2
Query: 533 YEFDTPVILCFVDYSKAFDCVGWNCLWRVLQELGV-PMHL 649
Y F T V L Y+ F+C W+ VL ELGV P HL
Sbjct: 1067 YLFGTNVTL----YNSNFNCSKWDQFQHVLTELGVSPEHL 1102
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,179,214
Number of Sequences: 27780
Number of extensions: 406298
Number of successful extensions: 952
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 924
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 952
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1766990064
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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