Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30682
         (747 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chlor...    25   1.00 
DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chlor...    25   1.00 
L01588-1|AAA27735.1|   74|Apis mellifera zinc finger protein pro...    23   2.3  
AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor pr...    22   5.3  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              21   9.3  

>DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 24.6 bits (51), Expect = 1.00
 Identities = 14/50 (28%), Positives = 24/50 (48%), Gaps = 1/50 (2%)
 Frame = +1

Query: 403 CCILSIPESDTFWIGKS-LRNRLVLSKAEVLVSRSLNPTINRKMLRIRYT 549
           CC+L I    +FW+ +S +  R+ L    +L   +    IN  +  + YT
Sbjct: 252 CCMLVIVSWVSFWLDQSAVPARVSLGVTTLLTMATQTSGINASLPPVSYT 301


>DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 24.6 bits (51), Expect = 1.00
 Identities = 14/50 (28%), Positives = 24/50 (48%), Gaps = 1/50 (2%)
 Frame = +1

Query: 403 CCILSIPESDTFWIGKS-LRNRLVLSKAEVLVSRSLNPTINRKMLRIRYT 549
           CC+L I    +FW+ +S +  R+ L    +L   +    IN  +  + YT
Sbjct: 252 CCMLVIVSWVSFWLDQSAVPARVSLGVTTLLTMATQTSGINASLPPVSYT 301


>L01588-1|AAA27735.1|   74|Apis mellifera zinc finger protein
           protein.
          Length = 74

 Score = 23.4 bits (48), Expect = 2.3
 Identities = 5/11 (45%), Positives = 9/11 (81%)
 Frame = -2

Query: 701 RPLQCPDCHSK 669
           +P +CP+CH +
Sbjct: 8   KPFECPECHKR 18


>AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor
           protein.
          Length = 501

 Score = 22.2 bits (45), Expect = 5.3
 Identities = 8/18 (44%), Positives = 12/18 (66%)
 Frame = -2

Query: 302 IIRPFTSLPDMIADFMST 249
           ++RPF   PD I  F+S+
Sbjct: 393 LVRPFLKNPDAIPAFLSS 410


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 21.4 bits (43), Expect = 9.3
 Identities = 8/21 (38%), Positives = 13/21 (61%)
 Frame = +1

Query: 34   ERWRRYCESLYKNPTNDTTCS 96
            ER +   E + + P +DTTC+
Sbjct: 1071 ERRQHTAEGVPEQPPHDTTCT 1091


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 213,597
Number of Sequences: 438
Number of extensions: 4418
Number of successful extensions: 13
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23388480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)