Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30682
         (747 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g33060.2 68414.m04076 no apical meristem (NAM) family protein...    28   7.6  
At1g33060.1 68414.m04075 no apical meristem (NAM) family protein...    28   7.6  
At4g34390.1 68417.m04885 extra-large guanine nucleotide binding ...    27   10.0 
At4g19610.1 68417.m02881 RNA recognition motif (RRM)-containing ...    27   10.0 

>At1g33060.2 68414.m04076 no apical meristem (NAM) family protein
           similar to NAC1 GB:AAF68626 GI:7716952 from (Medicago
           truncatula)
          Length = 652

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 13/30 (43%), Positives = 18/30 (60%), Gaps = 3/30 (10%)
 Frame = +1

Query: 49  YCESLYK---NPTNDTTCSPDFVWADIVQE 129
           +CE + K    PT  T CSPD   +++VQE
Sbjct: 183 HCEEIEKVNFTPTTTTRCSPDDTSSEMVQE 212


>At1g33060.1 68414.m04075 no apical meristem (NAM) family protein
           similar to NAC1 GB:AAF68626 GI:7716952 from (Medicago
           truncatula)
          Length = 648

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 13/30 (43%), Positives = 18/30 (60%), Gaps = 3/30 (10%)
 Frame = +1

Query: 49  YCESLYK---NPTNDTTCSPDFVWADIVQE 129
           +CE + K    PT  T CSPD   +++VQE
Sbjct: 183 HCEEIEKVNFTPTTTTRCSPDDTSSEMVQE 212


>At4g34390.1 68417.m04885 extra-large guanine nucleotide binding
           protein, putative / G-protein, putative similar to
           extra-large G-protein (XLG) [Arabidopsis thaliana]
           GI:3201680; contains Pfam profile PF00503: G-protein
           alpha subunit
          Length = 861

 Score = 27.5 bits (58), Expect = 10.0
 Identities = 9/22 (40%), Positives = 16/22 (72%)
 Frame = +3

Query: 414 INSRIRHFLDWQIPQEQAGFVK 479
           IN R++HF DW + +++ G +K
Sbjct: 545 INPRLKHFSDWVLKEKEDGNLK 566


>At4g19610.1 68417.m02881 RNA recognition motif (RRM)-containing
           protein contains InterPro entry IPR000504: RNA-binding
           region RNP-1 (RNA recognition motif) (RRM)
          Length = 783

 Score = 27.5 bits (58), Expect = 10.0
 Identities = 18/59 (30%), Positives = 29/59 (49%), Gaps = 1/59 (1%)
 Frame = +1

Query: 79  NDTTCSPDFVWADIVQEPSILHSEIXXXXXXXXDNK-APGHDKITAETLKALSDAGIDV 252
           N     PD +  +IV+   +  SE+          + A G  K+ AET +AL+ AG++V
Sbjct: 378 NSLFMRPDTILENIVRVYGVSKSELLDREAEDPAVRLALGETKVIAETKEALAKAGVNV 436


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,233,604
Number of Sequences: 28952
Number of extensions: 378228
Number of successful extensions: 1019
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 985
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1019
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1653386488
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)