Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV30681
(710 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBP23A10.05 |ssr4||SWI/SNF and RSC complex subunit Ssr4|Schizos... 31 0.12
SPCC16C4.08c |skb15||Shk1 kinase binding protein 15|Schizosaccha... 29 0.50
SPAC2E1P3.05c |||fungal cellulose binding domain protein|Schizos... 29 0.66
SPBC19F8.03c |||clathrin binding protein|Schizosaccharomyces pom... 29 0.66
SPCC1393.02c |||non-specific DNA binding protein Spt2 |Schizosac... 28 1.1
SPBP23A10.13 |orc4|orp4|origin recognition complex subunit Orc4|... 27 2.0
SPBC23E6.09 |ssn6||transcriptional corepressor Ssn6|Schizosaccha... 27 2.0
SPAC57A7.05 |||conserved protein |Schizosaccharomyces pombe|chr ... 27 2.0
SPAC1B9.02c |sck1||serine/threonine protein kinase Sck1|Schizosa... 27 2.0
SPAC1556.01c |rad50|SPAP4C9.01c|DNA repair protein Rad50|Schizos... 27 2.0
SPAC8C9.04 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||... 27 2.6
SPCC74.02c |||mRNA cleavage and polyadenylation specificity fact... 27 2.6
SPAC14C4.13 |rad17||RFC related checkpoint protein Rad17|Schizos... 27 3.5
SPAC664.01c |swi6|SPAC824.10c|chromodomain protein Swi6|Schizosa... 26 4.6
SPCC306.04c |set1||histone lysine methyltransferase Set1|Schizos... 26 4.6
SPBC13G1.10c |mug81||ATP-dependent RNA helicase Slh1|Schizosacch... 26 4.6
SPAC22H10.09 |||sequence orphan|Schizosaccharomyces pombe|chr 1|... 26 4.6
SPAP14E8.02 |||transcription factor |Schizosaccharomyces pombe|c... 26 4.6
SPBC15D4.09c |||cystathionine gamma-synthase |Schizosaccharomyce... 26 6.1
SPBC359.04c |||DIPSY family|Schizosaccharomyces pombe|chr 2|||Ma... 26 6.1
SPAC29A4.19c |||P-type ATPase |Schizosaccharomyces pombe|chr 1||... 26 6.1
SPBC6B1.09c |nbs1||Mre11 complex subunit Nbs1|Schizosaccharomyce... 25 8.1
SPAC22E12.19 ||SPAC2E12.01|histone deacetylase complex subunit |... 25 8.1
>SPBP23A10.05 |ssr4||SWI/SNF and RSC complex subunit
Ssr4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 395
Score = 31.5 bits (68), Expect = 0.12
Identities = 16/48 (33%), Positives = 24/48 (50%)
Frame = +1
Query: 343 TQIIKTETVPSESSTKNHQQDRNSYQQFSNSTVIRKPPVNQTVTCETS 486
T + + ET+P+ S + Q R FSN T PP+N T +T+
Sbjct: 189 TALSQRETLPNMGSAQMKSQSRTP--SFSNVTTSPVPPINSNATAQTA 234
>SPCC16C4.08c |skb15||Shk1 kinase binding protein
15|Schizosaccharomyces pombe|chr 3|||Manual
Length = 341
Score = 29.5 bits (63), Expect = 0.50
Identities = 12/35 (34%), Positives = 20/35 (57%)
Frame = +2
Query: 476 VKPRYRSRNPSKKQPSSTSAQTDSKKHYYTTRKQP 580
V+ R + S TS++++S+ YY+T KQP
Sbjct: 299 VEDEAAKRQSLDSETSETSSESESESEYYSTSKQP 333
>SPAC2E1P3.05c |||fungal cellulose binding domain
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 197
Score = 29.1 bits (62), Expect = 0.66
Identities = 13/42 (30%), Positives = 23/42 (54%)
Frame = +1
Query: 310 IKKQTVLSESPTQIIKTETVPSESSTKNHQQDRNSYQQFSNS 435
+ T+ S SP+ + T ++PS SST + +S+ S+S
Sbjct: 131 VSSTTLTSSSPSAVSSTTSIPSISSTISSSVSTSSFTSLSSS 172
>SPBC19F8.03c |||clathrin binding protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 649
Score = 29.1 bits (62), Expect = 0.66
Identities = 21/108 (19%), Positives = 54/108 (50%), Gaps = 4/108 (3%)
Frame = +1
Query: 274 QKQFSANLRHRNIKKQTVLSESPTQIIKTETVP-SESSTKNHQQDRNSYQQFSNST---V 441
+KQ+ N +++ +L+ PT + K +++P ++ + + Q N+ QQ ++S+
Sbjct: 277 RKQYLQNKSGSPVEETAILNRKPT-LRKKKSIPKKQNESSSTIQKENTVQQEASSSEEEA 335
Query: 442 IRKPPVNQTVTCETSLQKPKPIEETAVFYQRTNRQQKTLLHDSETAIQ 585
++ P Q T Q+ + I+E + + +++ ++SE ++
Sbjct: 336 VKSLPETQRTTSRIETQE-EEIKEEEMEGEEEEEEEEVPNYESENELE 382
>SPCC1393.02c |||non-specific DNA binding protein Spt2
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 406
Score = 28.3 bits (60), Expect = 1.1
Identities = 22/95 (23%), Positives = 40/95 (42%)
Frame = +2
Query: 263 PFIGKNSSQRISDIETSRNKQFSANLRHRSSRQKQFPVNLRQRTISKTETVTSSSPIVQL 442
P + ++RI +++ + N R + + + LRQ + + TSSS ++Q
Sbjct: 86 PPLSAEEAKRIREVKEKDRLESKKN--ERQGKPRSYNELLRQASSAPAVNETSSSGLLQS 143
Query: 443 SENHQ*TRQLPVKPRYRSRNPSKKQPSSTSAQTDS 547
+ + P KP S S+ QP S T +
Sbjct: 144 KDKRSQSPHSPKKPVKNS--SSRDQPVRNSGATST 176
>SPBP23A10.13 |orc4|orp4|origin recognition complex subunit
Orc4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 972
Score = 27.5 bits (58), Expect = 2.0
Identities = 18/50 (36%), Positives = 24/50 (48%), Gaps = 5/50 (10%)
Frame = +2
Query: 422 SSPIVQLSENHQ*TRQLPVKPRYRSRNPSKKQPSS-----TSAQTDSKKH 556
+SP Q N+Q P+ PR R R P K+Q ++ T TDS H
Sbjct: 405 TSPNNQQFLNNQQRESAPLLPRKRGRPPKKRQENAEIRNITPGLTDSSVH 454
>SPBC23E6.09 |ssn6||transcriptional corepressor
Ssn6|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1102
Score = 27.5 bits (58), Expect = 2.0
Identities = 24/96 (25%), Positives = 41/96 (42%)
Frame = +1
Query: 289 ANLRHRNIKKQTVLSESPTQIIKTETVPSESSTKNHQQDRNSYQQFSNSTVIRKPPVNQT 468
+N+ HR + +V S+S +T T S S R+S ++ NSTV+ P + +
Sbjct: 846 SNVSHRE-RSNSVSSKSR----ETRTSASNESDPKKSTQRDSSKKLENSTVVSGSPSSSS 900
Query: 469 VTCETSLQKPKPIEETAVFYQRTNRQQKTLLHDSET 576
+ KP+ E + T + T + ET
Sbjct: 901 KSDAAKSIKPQKPEPALKPVEGTADPKSTKRNHQET 936
>SPAC57A7.05 |||conserved protein |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1337
Score = 27.5 bits (58), Expect = 2.0
Identities = 31/112 (27%), Positives = 49/112 (43%), Gaps = 18/112 (16%)
Frame = +2
Query: 308 TSRNKQFSANLRHRSSRQKQFPVNLRQRTI---SKTETVTSS-SPIVQLSENHQ*T---- 463
T +++ +R +S+Q PVN RT+ S + T+S + IVQ +H T
Sbjct: 572 TQDSERNGEEIRRLASKQLNVPVNNNFRTVGYASPSNASTASFNDIVQRGRSHVRTGSNN 631
Query: 464 --RQLPVKPRYRSRNPSKKQPSSTSAQT-DSKKH-------YYTTRKQPYRP 589
L K RN +P S S ++ S+ H +Y RK+ Y+P
Sbjct: 632 SEAPLAAKTSTTKRNGDLLEPQSPSLRSHKSRLHLPSSLGKFYKKRKKSYKP 683
>SPAC1B9.02c |sck1||serine/threonine protein kinase
Sck1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 696
Score = 27.5 bits (58), Expect = 2.0
Identities = 16/44 (36%), Positives = 24/44 (54%)
Frame = +1
Query: 211 RVDSASRDGVLK*I*RMAIYRQKQFSANLRHRNIKKQTVLSESP 342
R + +R +K I + I R+K+ + L RNI +T L ESP
Sbjct: 320 RKNDTNRIYAMKKISKKLIVRKKEVTHTLGERNILVRTSLDESP 363
>SPAC1556.01c |rad50|SPAP4C9.01c|DNA repair protein
Rad50|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1290
Score = 27.5 bits (58), Expect = 2.0
Identities = 13/40 (32%), Positives = 22/40 (55%)
Frame = +2
Query: 284 SQRISDIETSRNKQFSANLRHRSSRQKQFPVNLRQRTISK 403
+ R+S+I +S KQ + RS + FPV L++ +K
Sbjct: 429 NNRVSEINSSLEKQLTTQKELRSRFEILFPVKLQREDFTK 468
>SPAC8C9.04 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 647
Score = 27.1 bits (57), Expect = 2.6
Identities = 14/77 (18%), Positives = 39/77 (50%)
Frame = +1
Query: 289 ANLRHRNIKKQTVLSESPTQIIKTETVPSESSTKNHQQDRNSYQQFSNSTVIRKPPVNQT 468
A++ N KK ++ K ++ + +S+ ++ +++ ++ T++++P QT
Sbjct: 43 ASVTKDNKKKAAKRAKKKAAKKKKQSAAASASSTPVEEAQHAQEEQQEQTILQEPGFTQT 102
Query: 469 VTCETSLQKPKPIEETA 519
+ + + Q +P+E A
Sbjct: 103 IVEKDADQVDEPLEPIA 119
>SPCC74.02c |||mRNA cleavage and polyadenylation specificity factor
complex associated protein|Schizosaccharomyces pombe|chr
3|||Manual
Length = 710
Score = 27.1 bits (57), Expect = 2.6
Identities = 17/48 (35%), Positives = 23/48 (47%)
Frame = +2
Query: 449 NHQ*TRQLPVKPRYRSRNPSKKQPSSTSAQTDSKKHYYTTRKQPYRPG 592
+H+ L P S NPS SS S+QT S ++ K+P PG
Sbjct: 71 SHKDASLLATMPSVASSNPSLI--SSGSSQTGSPSQSLSSNKEPSSPG 116
>SPAC14C4.13 |rad17||RFC related checkpoint protein
Rad17|Schizosaccharomyces pombe|chr 1|||Manual
Length = 606
Score = 26.6 bits (56), Expect = 3.5
Identities = 16/58 (27%), Positives = 29/58 (50%), Gaps = 1/58 (1%)
Frame = +1
Query: 271 RQKQFSANLRHRNIKKQTVLS-ESPTQIIKTETVPSESSTKNHQQDRNSYQQFSNSTV 441
RQ F + + R++KK+ + E P+ + KT + S T H++D ++ N V
Sbjct: 3 RQLSFHESTK-RSLKKKKIRKIEKPSLVSKTSRDKNASITDIHEEDIEAFSDEENKIV 59
>SPAC664.01c |swi6|SPAC824.10c|chromodomain protein
Swi6|Schizosaccharomyces pombe|chr 1|||Manual
Length = 328
Score = 26.2 bits (55), Expect = 4.6
Identities = 10/22 (45%), Positives = 13/22 (59%)
Frame = +2
Query: 491 RSRNPSKKQPSSTSAQTDSKKH 556
R + P K+PS S +TD KH
Sbjct: 149 RPKKPEAKEPSPKSRKTDEDKH 170
>SPCC306.04c |set1||histone lysine methyltransferase
Set1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 920
Score = 26.2 bits (55), Expect = 4.6
Identities = 13/41 (31%), Positives = 20/41 (48%)
Frame = +2
Query: 467 QLPVKPRYRSRNPSKKQPSSTSAQTDSKKHYYTTRKQPYRP 589
+LP P+++ R S K S ++T SK R+ RP
Sbjct: 439 KLPSLPKFKKRVDSSKMNLSAGSKTKSKLQRRRRRRHEARP 479
>SPBC13G1.10c |mug81||ATP-dependent RNA helicase
Slh1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1935
Score = 26.2 bits (55), Expect = 4.6
Identities = 13/27 (48%), Positives = 16/27 (59%)
Frame = +2
Query: 158 CGALSLR*HTDQGTPESGASIARREMG 238
CG+LSL +D T E G I R+MG
Sbjct: 952 CGSLSLEELSDMSTGELGDLIHNRKMG 978
>SPAC22H10.09 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 646
Score = 26.2 bits (55), Expect = 4.6
Identities = 12/46 (26%), Positives = 21/46 (45%)
Frame = -2
Query: 616 FENRILYTTRSVWLFPSRVIMFFAVCLCAGRRRLFLRWVSASVARF 479
FE + Y R + + P + FF CL + L+++ S +F
Sbjct: 505 FEVKDFYRKRGIEIMPKNLPRFFCYCLKKNKLSYALKYIRLSGLQF 550
>SPAP14E8.02 |||transcription factor |Schizosaccharomyces pombe|chr
1|||Manual
Length = 566
Score = 26.2 bits (55), Expect = 4.6
Identities = 15/60 (25%), Positives = 33/60 (55%), Gaps = 1/60 (1%)
Frame = +1
Query: 274 QKQFSANLRHRNIKK-QTVLSESPTQIIKTETVPSESSTKNHQQDRNSYQQFSNSTVIRK 450
+ ++ NL +N ++ + +S SP + + +PS ++++Q D+N ++NS I K
Sbjct: 178 EDEWEGNLNAKNYEENREPMSPSPQEALPL--MPSSPPSQDYQNDQNHLILYTNSESIPK 235
>SPBC15D4.09c |||cystathionine gamma-synthase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 610
Score = 25.8 bits (54), Expect = 6.1
Identities = 21/71 (29%), Positives = 29/71 (40%), Gaps = 6/71 (8%)
Frame = +1
Query: 466 TVTCETSLQKPKPIEETAVFYQRTNRQQKTLLHDSETAIQTGSCTIFYFQRVLYFLW--- 636
T+ E LQK P E + R+ K L HD TG I+ R+L +
Sbjct: 266 TLKDEVDLQKALPKEGSQYL-----REVKGLSHDDVFLFPTGMSAIYNTHRILRLVLDDS 320
Query: 637 ---VCDNFCFI 660
VC FC++
Sbjct: 321 RKSVCFGFCYV 331
>SPBC359.04c |||DIPSY family|Schizosaccharomyces pombe|chr
2|||Manual
Length = 358
Score = 25.8 bits (54), Expect = 6.1
Identities = 17/52 (32%), Positives = 23/52 (44%)
Frame = +1
Query: 331 SESPTQIIKTETVPSESSTKNHQQDRNSYQQFSNSTVIRKPPVNQTVTCETS 486
S S + I+ T+ + SST S SNST+ PV T + TS
Sbjct: 79 SLSSSSILSNSTISTSSSTPITASVPTSSSILSNSTIPTTSPVPTTSSTPTS 130
>SPAC29A4.19c |||P-type ATPase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1096
Score = 25.8 bits (54), Expect = 6.1
Identities = 8/18 (44%), Positives = 12/18 (66%)
Frame = +1
Query: 604 FYFQRVLYFLWVCDNFCF 657
+ FQ V +W+CD+F F
Sbjct: 204 YLFQAVSVLIWLCDSFVF 221
>SPBC6B1.09c |nbs1||Mre11 complex subunit Nbs1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 613
Score = 25.4 bits (53), Expect = 8.1
Identities = 15/39 (38%), Positives = 22/39 (56%)
Frame = +3
Query: 444 QKTTSEPDSYL*NLATEAETHRRNSRLLPAHKQTAKNII 560
+KT DSYL L+T E+ ++ L+P + KNII
Sbjct: 171 KKTVIIDDSYLQYLSTVKESVIEDASLMPDALECFKNII 209
>SPAC22E12.19 ||SPAC2E12.01|histone deacetylase complex subunit
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 661
Score = 25.4 bits (53), Expect = 8.1
Identities = 15/64 (23%), Positives = 29/64 (45%), Gaps = 3/64 (4%)
Frame = +2
Query: 401 KTETVTSSSPIVQL---SENHQ*TRQLPVKPRYRSRNPSKKQPSSTSAQTDSKKHYYTTR 571
K+ETV+ V + +EN L +K + P++ +P S T ++ YY +
Sbjct: 423 KSETVSGFKHDVDVYDTAENEGNNTLLQIKESVHEKTPTQDEPMDISQDTIKQEDYYEPK 482
Query: 572 KQPY 583
+ +
Sbjct: 483 LEQH 486
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,930,817
Number of Sequences: 5004
Number of extensions: 63625
Number of successful extensions: 251
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 242
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 251
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 331187010
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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