Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV30681
(710 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_04_0480 - 23274945-23275196,23275558-23275623,23276709-232768... 32 0.39
03_05_0429 - 24157060-24157671,24158000-24158468,24158679-241587... 31 1.2
05_04_0028 + 17302359-17302445,17303887-17303952,17305415-173054... 30 1.6
10_07_0063 - 12502305-12503361,12503567-12503668,12504251-125043... 29 3.6
08_01_0511 + 4459685-4459755,4461553-4463653,4463741-4463808,446... 29 3.6
04_04_1107 - 30954647-30954769,30955052-30955141,30955309-309556... 29 4.8
09_04_0721 + 19725695-19725697,19725793-19725859,19725944-197260... 28 6.4
03_01_0392 + 3051469-3051876,3052414-3052832,3053992-3054061,305... 28 6.4
01_01_0542 + 3975500-3975546,3976273-3976370,3976694-3976830,397... 28 6.4
11_06_0745 + 26857968-26859955,26860697-26860712 28 8.4
>02_04_0480 -
23274945-23275196,23275558-23275623,23276709-23276851,
23276947-23277063,23277219-23278683,23279561-23280730
Length = 1070
Score = 32.3 bits (70), Expect = 0.39
Identities = 24/99 (24%), Positives = 47/99 (47%), Gaps = 3/99 (3%)
Frame = +2
Query: 302 IETSRNKQFSANLRHRS-SRQKQFPVNLRQRTISK--TETVTSSSPIVQLSENHQ*TRQL 472
++ + N+ N++ S +K P+++ + + K T T S+ +V + + +
Sbjct: 233 MQRTSNQNGEKNMKSDGDSYKKTVPLSVNKGKMEKDGTNKRTLSNTLVAKERKMRPSDSM 292
Query: 473 PVKPRYRSRNPSKKQPSSTSAQTDSKKHYYTTRKQPYRP 589
+K + + R+ S QP +AQT S K+ RK P P
Sbjct: 293 EMKMKKKKRDASFVQPDERTAQTFSTKNKEKKRKAPSTP 331
>03_05_0429 -
24157060-24157671,24158000-24158468,24158679-24158752,
24159231-24159280,24159368-24159449,24159526-24159575,
24159666-24159708,24159804-24159884,24159988-24160033,
24160151-24160197,24160358-24160423,24160701-24160767,
24160913-24160998
Length = 590
Score = 30.7 bits (66), Expect = 1.2
Identities = 20/73 (27%), Positives = 38/73 (52%), Gaps = 4/73 (5%)
Frame = +1
Query: 310 IKKQTVLSESPTQIIKT-ETVPSES-STKNHQQDRNSYQQFSNSTVIRKPPVNQT--VTC 477
+ +T + + I+KT + PS++ +T + + SY + + S ++ + PVN++ V
Sbjct: 343 VSSKTTFTTRTSSIVKTPKRTPSKTITTPQLEPPKVSYNRVNRSELLSRTPVNRSARVIR 402
Query: 478 ETSLQKPKPIEET 516
SL P P ET
Sbjct: 403 RASLPLPLPSSET 415
>05_04_0028 +
17302359-17302445,17303887-17303952,17305415-17305489,
17305638-17305737,17305819-17305865,17305937-17305994,
17306161-17306210,17306417-17306473,17306561-17306703,
17306793-17306834,17307083-17307124,17308239-17308272,
17308342-17308443,17310373-17310652,17311202-17311332,
17311676-17311773,17312525-17312717
Length = 534
Score = 30.3 bits (65), Expect = 1.6
Identities = 29/113 (25%), Positives = 47/113 (41%), Gaps = 11/113 (9%)
Frame = +2
Query: 281 SSQRISDIETSRNKQFSANL--RHRSSRQKQFPVNLRQRTIS------KTETVTSSSPIV 436
S R I SR++ +S + R RS+ + PV R R+ S K + + S P
Sbjct: 206 SRSRSRSISRSRSRSYSRSRSPRSRSASRSHSPVKERSRSASQSRSPVKERSPSRSPPPA 265
Query: 437 QLSENHQ*TRQLPVKPRYRSRNPSKKQPSSTSA---QTDSKKHYYTTRKQPYR 586
+ + PVK R SR+PS + + + ++H + PYR
Sbjct: 266 TSPPREKSASKSPVKSRSLSRSPSPVRDINQKLCIFRLQQQRHVWDHDHPPYR 318
>10_07_0063 -
12502305-12503361,12503567-12503668,12504251-12504378,
12504653-12504764,12504876-12504927,12505260-12505517,
12505943-12506079,12506296-12506606
Length = 718
Score = 29.1 bits (62), Expect = 3.6
Identities = 27/90 (30%), Positives = 43/90 (47%)
Frame = +2
Query: 263 PFIGKNSSQRISDIETSRNKQFSANLRHRSSRQKQFPVNLRQRTISKTETVTSSSPIVQL 442
P + + QR + +TS +Q N + SRQ N+R++ IS T T P Q
Sbjct: 483 PRVPPSQEQRAAVSQTSAARQDFTNHQAPPSRQHGGSENMRRQEISSRPTPT---PTPQQ 539
Query: 443 SENHQ*TRQLPVKPRYRSRNPSKKQPSSTS 532
+ ++ T+Q P P ++ RN + Q TS
Sbjct: 540 AVSY--TQQQP--PNHQYRNEAFWQQGGTS 565
>08_01_0511 +
4459685-4459755,4461553-4463653,4463741-4463808,
4465156-4465282,4465379-4465429
Length = 805
Score = 29.1 bits (62), Expect = 3.6
Identities = 17/52 (32%), Positives = 27/52 (51%), Gaps = 1/52 (1%)
Frame = +1
Query: 460 NQTVTCETSLQKPKPIEETAVFYQRTNRQQKTLLHDSETAIQTGSCTIF-YF 612
N T +T+ KP PI+E Y + NR++ ++ + + S TIF YF
Sbjct: 259 NFTTLLDTTEFKPIPIDEPRRVYFQNNRKENVIMATNLSLKNVRSLTIFGYF 310
>04_04_1107 -
30954647-30954769,30955052-30955141,30955309-30955617,
30955732-30955842,30955945-30956379,30956452-30956610,
30957044-30957994,30959016-30959483
Length = 881
Score = 28.7 bits (61), Expect = 4.8
Identities = 17/71 (23%), Positives = 29/71 (40%)
Frame = +2
Query: 341 RHRSSRQKQFPVNLRQRTISKTETVTSSSPIVQLSENHQ*TRQLPVKPRYRSRNPSKKQP 520
RH R +Q P R++ + ET +S + H R+ PV +
Sbjct: 162 RHHPIRSEQIPAQCSIRSVPREETFSSFRNDSPAAVQHTLARKEPVNHSIHRGESCNETL 221
Query: 521 SSTSAQTDSKK 553
T+A++ S+K
Sbjct: 222 DKTTARSSSRK 232
>09_04_0721 +
19725695-19725697,19725793-19725859,19725944-19726044,
19726780-19726824,19727052-19727522,19727972-19728142
Length = 285
Score = 28.3 bits (60), Expect = 6.4
Identities = 15/44 (34%), Positives = 26/44 (59%), Gaps = 1/44 (2%)
Frame = +1
Query: 322 TVLSESPT-QIIKTETVPSESSTKNHQQDRNSYQQFSNSTVIRK 450
TV + P+ +II+ +T+P+ + H QD++ QQ S T R+
Sbjct: 76 TVHFQDPSAEIIRCKTIPNVLANLEHAQDKHGQQQGSPLTPSRQ 119
>03_01_0392 +
3051469-3051876,3052414-3052832,3053992-3054061,
3054923-3055016,3056587-3056907,3057298-3057403,
3058807-3058887,3059336-3059402,3059715-3060239,
3060328-3060553,3060628-3060967,3061311-3061659,
3061755-3062357
Length = 1202
Score = 28.3 bits (60), Expect = 6.4
Identities = 14/54 (25%), Positives = 22/54 (40%)
Frame = +1
Query: 496 PKPIEETAVFYQRTNRQQKTLLHDSETAIQTGSCTIFYFQRVLYFLWVCDNFCF 657
PK E+ + + + HD Q +CT F+ +L+ LW CF
Sbjct: 239 PKVSEKADSNHTKVSEDSAKTYHDDSPKKQKDACTAPRFENILFPLWNILKDCF 292
>01_01_0542 +
3975500-3975546,3976273-3976370,3976694-3976830,
3977518-3977871,3977953-3978041,3978502-3978589,
3978659-3978734,3978858-3978907,3979032-3979340,
3979803-3979982,3980086-3980325,3980471-3980582,
3980931-3981040,3981162-3981311,3981777-3981932,
3982289-3982405,3982759-3982839,3983338-3983478
Length = 844
Score = 28.3 bits (60), Expect = 6.4
Identities = 12/43 (27%), Positives = 26/43 (60%), Gaps = 1/43 (2%)
Frame = +1
Query: 337 SPTQIIKTETVPSE-SSTKNHQQDRNSYQQFSNSTVIRKPPVN 462
SP Q ++T+ + + ++ + HQQ N Q +S + ++PP++
Sbjct: 404 SPVQRMETDMLMKKIAAIQQHQQSSNQQQLLQHSLLSQQPPIS 446
>11_06_0745 + 26857968-26859955,26860697-26860712
Length = 667
Score = 27.9 bits (59), Expect = 8.4
Identities = 12/20 (60%), Positives = 15/20 (75%)
Frame = -3
Query: 354 DDLCRRFAENCLFLDVSMSE 295
DDLCRRFAE+ L V+M +
Sbjct: 579 DDLCRRFAESALTNAVTMHQ 598
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,456,621
Number of Sequences: 37544
Number of extensions: 358266
Number of successful extensions: 979
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 950
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 978
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1839213168
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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