Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV30681
(710 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g17620.1 68414.m02179 expressed protein 31 0.75
At3g29430.1 68416.m03697 geranylgeranyl pyrophosphate synthase, ... 31 1.00
At5g57820.1 68418.m07231 hypothetical protein 29 2.3
At1g16680.1 68414.m01997 DNAJ heat shock N-terminal domain-conta... 29 2.3
At5g40530.2 68418.m04918 expressed protein contains Pfam profile... 29 3.0
At5g40530.1 68418.m04919 expressed protein contains Pfam profile... 29 3.0
At5g01730.1 68418.m00091 expressed protein 29 4.0
At1g09810.1 68414.m01101 expressed protein contains Pfam profile... 29 4.0
At1g24851.1 68414.m03110 hypothetical protein 28 5.3
At3g61390.2 68416.m06872 U-box domain-containing protein several... 28 7.0
At3g61390.1 68416.m06871 U-box domain-containing protein several... 28 7.0
At2g27090.1 68415.m03255 expressed protein contains Pfam domains... 28 7.0
At1g03780.2 68414.m00358 targeting protein-related similar to mi... 28 7.0
At1g03780.1 68414.m00359 targeting protein-related similar to mi... 28 7.0
At5g60150.1 68418.m07540 expressed protein ; expression supporte... 27 9.3
At2g43440.1 68415.m05399 F-box family protein contains Pfam PF00... 27 9.3
At1g06160.1 68414.m00647 ethylene-responsive factor, putative si... 27 9.3
>At1g17620.1 68414.m02179 expressed protein
Length = 264
Score = 31.1 bits (67), Expect = 0.75
Identities = 17/53 (32%), Positives = 25/53 (47%), Gaps = 2/53 (3%)
Frame = +2
Query: 518 PSSTSAQTDSKKHYYTTRKQPYRP--GRVQYSIFKECCISCGYVTIFVLFRLI 670
P++ +K Y + YRP GR + S + CC C TIFV+ L+
Sbjct: 21 PTTNPTFPANKAQLYNANRPAYRPPAGRRRTSHTRGCCCRCCCWTIFVIILLL 73
>At3g29430.1 68416.m03697 geranylgeranyl pyrophosphate synthase,
putative / GGPP synthetase, putative /
farnesyltranstransferase, putative similar to gi:413730;
similar to geranylgeranyl pyrophosphate synthase,
chloroplast precursor GB:P34802 from [Arabidopsis
thaliana]
Length = 357
Score = 30.7 bits (66), Expect = 1.00
Identities = 24/88 (27%), Positives = 44/88 (50%), Gaps = 1/88 (1%)
Frame = +1
Query: 268 YRQKQFSANLRHRNIKKQTVLSESPTQIIKT-ETVPSESSTKNHQQDRNSYQQFSNSTVI 444
+R +++++ N++K+TVLS S + + +P E + DRNS F + +
Sbjct: 14 FRGRRYNSLSSFNNLQKRTVLSLSCALSSQGGDMIPPEGKSN----DRNSAFDFKSYMIR 69
Query: 445 RKPPVNQTVTCETSLQKPKPIEETAVFY 528
+ V+ + LQ+P I+E AV Y
Sbjct: 70 KAESVSAALNVSVPLQEPLTIQE-AVRY 96
>At5g57820.1 68418.m07231 hypothetical protein
Length = 161
Score = 29.5 bits (63), Expect = 2.3
Identities = 16/42 (38%), Positives = 22/42 (52%)
Frame = +2
Query: 572 KQPYRPGRVQYSIFKECCISCGYVTIFVLFRLITKLFLNNHS 697
K P RP + + C +SCG+V F R T L ++NHS
Sbjct: 110 KDPERPNASLSGLQEACVLSCGHVYHFKCLR-GTTLDIDNHS 150
>At1g16680.1 68414.m01997 DNAJ heat shock N-terminal
domain-containing protein / S-locus protein, putative
similar to S-locus protein 5 GI:6069485 from [Brassica
rapa]; contains Pfam profile PF00226 DnaJ domain
Length = 496
Score = 29.5 bits (63), Expect = 2.3
Identities = 14/44 (31%), Positives = 26/44 (59%)
Frame = +1
Query: 313 KKQTVLSESPTQIIKTETVPSESSTKNHQQDRNSYQQFSNSTVI 444
K +TV+ E + +VP+E + K +D++S + S+STV+
Sbjct: 160 KPETVIDEEFPGEFEYSSVPAEEAEKKVHEDKSSTKPASSSTVV 203
>At5g40530.2 68418.m04918 expressed protein contains Pfam profile
PF05148: Protein of unknown function (DUF691)
Length = 301
Score = 29.1 bits (62), Expect = 3.0
Identities = 14/54 (25%), Positives = 26/54 (48%)
Frame = +1
Query: 292 NLRHRNIKKQTVLSESPTQIIKTETVPSESSTKNHQQDRNSYQQFSNSTVIRKP 453
N RN K++ + P++ ET P + K +Q+D + Q +S ++P
Sbjct: 6 NKTSRNRKRKRQRNPKPSKEEPIETTPKNQNEKKNQRDTKNQQHGGSSAPSKRP 59
>At5g40530.1 68418.m04919 expressed protein contains Pfam profile
PF05148: Protein of unknown function (DUF691)
Length = 287
Score = 29.1 bits (62), Expect = 3.0
Identities = 14/54 (25%), Positives = 26/54 (48%)
Frame = +1
Query: 292 NLRHRNIKKQTVLSESPTQIIKTETVPSESSTKNHQQDRNSYQQFSNSTVIRKP 453
N RN K++ + P++ ET P + K +Q+D + Q +S ++P
Sbjct: 6 NKTSRNRKRKRQRNPKPSKEEPIETTPKNQNEKKNQRDTKNQQHGGSSAPSKRP 59
>At5g01730.1 68418.m00091 expressed protein
Length = 1192
Score = 28.7 bits (61), Expect = 4.0
Identities = 15/47 (31%), Positives = 20/47 (42%)
Frame = +1
Query: 283 FSANLRHRNIKKQTVLSESPTQIIKTETVPSESSTKNHQQDRNSYQQ 423
FS NLR N L E Q+ P ++ + +D NSY Q
Sbjct: 1049 FSQNLREHNNPHPAKLEEEEPQVDHPLEKPGQTKFRQTLRDNNSYNQ 1095
>At1g09810.1 68414.m01101 expressed protein contains Pfam profile
PF04146: YT521-B-like family
Length = 428
Score = 28.7 bits (61), Expect = 4.0
Identities = 12/40 (30%), Positives = 21/40 (52%)
Frame = +1
Query: 388 KNHQQDRNSYQQFSNSTVIRKPPVNQTVTCETSLQKPKPI 507
K + +D+NS +++ST+ P +TS PKP+
Sbjct: 26 KGNHRDKNSSDVYADSTLRGDRPKGSNCLSQTSFSAPKPL 65
>At1g24851.1 68414.m03110 hypothetical protein
Length = 258
Score = 28.3 bits (60), Expect = 5.3
Identities = 27/90 (30%), Positives = 37/90 (41%), Gaps = 7/90 (7%)
Frame = +2
Query: 341 RHRSSRQKQFPVNLRQRTISKTETVTSSSPIVQLSENHQ*TRQLPVK------PRYRSRN 502
RHR++RQ P R++S + + S QLS Q + PV P +R
Sbjct: 13 RHRAARQLTRPKYPASRSVSSSSSAHPSQAARQLSRPKQLVSR-PVSSSSSAHPSQAARQ 71
Query: 503 PS-KKQPSSTSAQTDSKKHYYTTRKQPYRP 589
S K P+S S S H +Q RP
Sbjct: 72 LSPPKYPASRSVSNSSSAHPSQAARQLTRP 101
>At3g61390.2 68416.m06872 U-box domain-containing protein several
hypothetical proteins - Arabidopsis thaliana
Length = 435
Score = 27.9 bits (59), Expect = 7.0
Identities = 15/42 (35%), Positives = 25/42 (59%)
Frame = +1
Query: 271 RQKQFSANLRHRNIKKQTVLSESPTQIIKTETVPSESSTKNH 396
++K+ LR RN + + + SES TQI ++ TV + KN+
Sbjct: 269 QRKETEKALRKRNDELEKMRSESETQITESYTVIRKLQEKNN 310
>At3g61390.1 68416.m06871 U-box domain-containing protein several
hypothetical proteins - Arabidopsis thaliana
Length = 373
Score = 27.9 bits (59), Expect = 7.0
Identities = 15/42 (35%), Positives = 25/42 (59%)
Frame = +1
Query: 271 RQKQFSANLRHRNIKKQTVLSESPTQIIKTETVPSESSTKNH 396
++K+ LR RN + + + SES TQI ++ TV + KN+
Sbjct: 269 QRKETEKALRKRNDELEKMRSESETQITESYTVIRKLQEKNN 310
>At2g27090.1 68415.m03255 expressed protein contains Pfam domains,
PF04782: Protein of unknown function (DUF632) and
PF04783: Protein of unknown function (DUF630)
Length = 743
Score = 27.9 bits (59), Expect = 7.0
Identities = 15/43 (34%), Positives = 21/43 (48%)
Frame = +1
Query: 370 PSESSTKNHQQDRNSYQQFSNSTVIRKPPVNQTVTCETSLQKP 498
PS ST Q + ++ FS+ V KPPV+ T +S P
Sbjct: 107 PSPPSTSPFQVNHMKFKGFSSKKVEEKPPVSIIATVTSSSIPP 149
>At1g03780.2 68414.m00358 targeting protein-related similar to
microtubule-associated protein / targeting protein for
Xklp2 ((TPX2) GI:8926138) {Homo sapiens}; similar to
Restricted expression proliferation associated protein
100 (p100) (Differentially expressed in lung cells 2)
(DIL-2) (Targeting protein for Xklp2) (C20orf1 protein)
(C20orf2 protein) (Protein FLS353)(SP:Q9ULW0) {Homo
sapiens}
Length = 725
Score = 27.9 bits (59), Expect = 7.0
Identities = 16/62 (25%), Positives = 28/62 (45%), Gaps = 3/62 (4%)
Frame = +1
Query: 328 LSESPTQIIKTETVPSESSTKNHQQDRNSYQQFSNSTVIRKPPVNQTVTCETSLQ---KP 498
L P+Q K E PS++ST + + + +N TV P + + + ++ P
Sbjct: 99 LQSQPSQAKKAEVAPSKASTVKPSRISSKDAEVNNKTVDASDPTTEPIEDKENIAPACTP 158
Query: 499 KP 504
KP
Sbjct: 159 KP 160
>At1g03780.1 68414.m00359 targeting protein-related similar to
microtubule-associated protein / targeting protein for
Xklp2 ((TPX2) GI:8926138) {Homo sapiens}; similar to
Restricted expression proliferation associated protein
100 (p100) (Differentially expressed in lung cells 2)
(DIL-2) (Targeting protein for Xklp2) (C20orf1 protein)
(C20orf2 protein) (Protein FLS353)(SP:Q9ULW0) {Homo
sapiens}
Length = 687
Score = 27.9 bits (59), Expect = 7.0
Identities = 16/62 (25%), Positives = 28/62 (45%), Gaps = 3/62 (4%)
Frame = +1
Query: 328 LSESPTQIIKTETVPSESSTKNHQQDRNSYQQFSNSTVIRKPPVNQTVTCETSLQ---KP 498
L P+Q K E PS++ST + + + +N TV P + + + ++ P
Sbjct: 99 LQSQPSQAKKAEVAPSKASTVKPSRISSKDAEVNNKTVDASDPTTEPIEDKENIAPACTP 158
Query: 499 KP 504
KP
Sbjct: 159 KP 160
>At5g60150.1 68418.m07540 expressed protein ; expression supported
by MPSS
Length = 1195
Score = 27.5 bits (58), Expect = 9.3
Identities = 17/74 (22%), Positives = 33/74 (44%)
Frame = +2
Query: 353 SRQKQFPVNLRQRTISKTETVTSSSPIVQLSENHQ*TRQLPVKPRYRSRNPSKKQPSSTS 532
+R+K+ + + +S ++ T+ S V + N + T Q P+K + K S
Sbjct: 186 NREKKLVSGIMPKELSISKVPTTKSDPVTVGNNMKRTTQSPIKAKNSQPTQLKNSQRSLG 245
Query: 533 AQTDSKKHYYTTRK 574
+++ SK T K
Sbjct: 246 SESFSKNTSSTKSK 259
>At2g43440.1 68415.m05399 F-box family protein contains Pfam
PF00646: F-box domain; contains TIGRFAM TIGR01640 :
F-box protein interaction domain
Length = 791
Score = 27.5 bits (58), Expect = 9.3
Identities = 12/36 (33%), Positives = 21/36 (58%)
Frame = -3
Query: 690 LLRNNLVINLNKTKIVTYPQEIQHSLKIEYCTRPGL 583
+L +NL + +T +P+ I + +YCTRPG+
Sbjct: 429 ILESNLFVERRRTLQKNHPK-ILAAYNCDYCTRPGI 463
>At1g06160.1 68414.m00647 ethylene-responsive factor, putative
similar to ethylene response factor 1 GB:AAD03544
GI:4128208 from [Arabidopsis thaliana]
Length = 244
Score = 27.5 bits (58), Expect = 9.3
Identities = 16/63 (25%), Positives = 29/63 (46%), Gaps = 3/63 (4%)
Frame = +2
Query: 368 FPVNLRQRTISKTETVT---SSSPIVQLSENHQ*TRQLPVKPRYRSRNPSKKQPSSTSAQ 538
FP ++ + ++ K E V SP++ L H + K + S + PSS+S+
Sbjct: 138 FPADVVEESLRKMENVNLNDGESPVIALKRKHSMRNRPRGKKKSSSSSTLTSSPSSSSSY 197
Query: 539 TDS 547
+ S
Sbjct: 198 SSS 200
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,820,217
Number of Sequences: 28952
Number of extensions: 316251
Number of successful extensions: 1025
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 987
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1022
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1535986264
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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