Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30680
         (311 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U14732-1|AAC46491.1|  322|Tribolium castaneum fushi-tarazu protein.    24   0.43 
AY043292-2|AAK96032.1|  290|Tribolium castaneum homeodomain tran...    24   0.43 
AF321227-1|AAK16421.1|  290|Tribolium castaneum Ftz protein.           24   0.43 
AY362543-1|AAQ63455.1|  677|Tribolium castaneum chitin synthase ...    20   6.9  
AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase ...    20   6.9  
AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase ...    20   6.9  
AY043293-1|AAK96033.1|  523|Tribolium castaneum homeodomain tran...    19   9.2  
AF187069-1|AAF03889.1|  471|Tribolium castaneum proboscipedia or...    19   9.2  
AF187068-1|AAF03888.1|  477|Tribolium castaneum proboscipedia or...    19   9.2  

>U14732-1|AAC46491.1|  322|Tribolium castaneum fushi-tarazu protein.
          Length = 322

 Score = 23.8 bits (49), Expect = 0.43
 Identities = 9/24 (37%), Positives = 12/24 (50%)
 Frame = +1

Query: 34  ARPPLRFYQWMRPSRMSRAVKRRR 105
           + PP  FY WM+    S A   +R
Sbjct: 162 SEPPANFYPWMKAHGDSSATGNKR 185


>AY043292-2|AAK96032.1|  290|Tribolium castaneum homeodomain
           transcription factor Fushitarazu protein.
          Length = 290

 Score = 23.8 bits (49), Expect = 0.43
 Identities = 9/24 (37%), Positives = 12/24 (50%)
 Frame = +1

Query: 34  ARPPLRFYQWMRPSRMSRAVKRRR 105
           + PP  FY WM+    S A   +R
Sbjct: 162 SEPPANFYPWMKAHGDSSATGNKR 185


>AF321227-1|AAK16421.1|  290|Tribolium castaneum Ftz protein.
          Length = 290

 Score = 23.8 bits (49), Expect = 0.43
 Identities = 9/24 (37%), Positives = 12/24 (50%)
 Frame = +1

Query: 34  ARPPLRFYQWMRPSRMSRAVKRRR 105
           + PP  FY WM+    S A   +R
Sbjct: 162 SEPPANFYPWMKAHGDSSATGNKR 185


>AY362543-1|AAQ63455.1|  677|Tribolium castaneum chitin synthase
           protein.
          Length = 677

 Score = 19.8 bits (39), Expect = 6.9
 Identities = 6/14 (42%), Positives = 9/14 (64%)
 Frame = +1

Query: 118 AWTALVWNRTRQWL 159
           AW  LVW  ++ W+
Sbjct: 218 AWIWLVWLLSQAWI 231


>AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase
           protein.
          Length = 1464

 Score = 19.8 bits (39), Expect = 6.9
 Identities = 6/14 (42%), Positives = 9/14 (64%)
 Frame = +1

Query: 118 AWTALVWNRTRQWL 159
           AW  LVW  ++ W+
Sbjct: 451 AWIWLVWLLSQAWI 464


>AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase
           CHS2 protein.
          Length = 1464

 Score = 19.8 bits (39), Expect = 6.9
 Identities = 6/14 (42%), Positives = 9/14 (64%)
 Frame = +1

Query: 118 AWTALVWNRTRQWL 159
           AW  LVW  ++ W+
Sbjct: 451 AWIWLVWLLSQAWI 464


>AY043293-1|AAK96033.1|  523|Tribolium castaneum homeodomain
           transcription factor Maxillopediaprotein.
          Length = 523

 Score = 19.4 bits (38), Expect = 9.2
 Identities = 7/15 (46%), Positives = 9/15 (60%)
 Frame = -2

Query: 139 SIRGRSMPRPGICAS 95
           S +G  MP  G+C S
Sbjct: 100 SCQGCEMPSAGLCGS 114


>AF187069-1|AAF03889.1|  471|Tribolium castaneum proboscipedia
           ortholog protein.
          Length = 471

 Score = 19.4 bits (38), Expect = 9.2
 Identities = 7/15 (46%), Positives = 9/15 (60%)
 Frame = -2

Query: 139 SIRGRSMPRPGICAS 95
           S +G  MP  G+C S
Sbjct: 48  SCQGCEMPSAGLCGS 62


>AF187068-1|AAF03888.1|  477|Tribolium castaneum proboscipedia
           ortholog protein.
          Length = 477

 Score = 19.4 bits (38), Expect = 9.2
 Identities = 7/15 (46%), Positives = 9/15 (60%)
 Frame = -2

Query: 139 SIRGRSMPRPGICAS 95
           S +G  MP  G+C S
Sbjct: 231 SCQGCEMPSAGLCGS 245


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 61,611
Number of Sequences: 336
Number of extensions: 1111
Number of successful extensions: 9
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 122,585
effective HSP length: 49
effective length of database: 106,121
effective search space used:  5730534
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 38 (20.3 bits)