Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV30680
(311 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC25H2.12c |cct7||chaperonin-containing T-complex eta subunit ... 34 0.004
SPBC1A4.08c |cct3||chaperonin-containing T-complex gamma subunit... 25 2.0
SPAP27G11.12 |||human down-regulated in multiple cancers-1 homol... 25 3.5
SPBC23G7.08c |rga7||GTPase activating protein Rga7|Schizosacchar... 25 3.5
SPBC19C7.02 |ubr1|SPBC32F12.14|N-end-recognizing protein Ubr1|Sc... 24 4.6
SPAC4H3.09 |||mitochondrial type II fatty acid synthase componen... 24 4.6
SPBC32H8.11 |mei4||meiotic forkhead transcription factor Mei4 |S... 24 6.1
SPBC1711.16 |||WD repeat protein Pwp1 |Schizosaccharomyces pombe... 24 6.1
SPCC1020.05 |||phosphoprotein phosphatase |Schizosaccharomyces p... 24 6.1
SPAC343.18 |rfp2||ubiquitin-protein ligase E3 Rfp2|Schizosacchar... 23 8.1
SPBC19C2.10 |||BAR adaptor protein|Schizosaccharomyces pombe|chr... 23 8.1
>SPBC25H2.12c |cct7||chaperonin-containing T-complex eta subunit
Cct7|Schizosaccharomyces pombe|chr 2|||Manual
Length = 558
Score = 34.3 bits (75), Expect = 0.004
Identities = 19/35 (54%), Positives = 24/35 (68%)
Frame = +3
Query: 6 VKLNAVNTACKATAQILSVDETIKNVKSGEEAQMP 110
VK NA+ +A +A ILSVDETIKN S ++ Q P
Sbjct: 503 VKSNAILSATEAATLILSVDETIKNEPS-QQPQAP 536
>SPBC1A4.08c |cct3||chaperonin-containing T-complex gamma subunit
Cct3|Schizosaccharomyces pombe|chr 2|||Manual
Length = 528
Score = 25.4 bits (53), Expect = 2.0
Identities = 10/31 (32%), Positives = 18/31 (58%)
Frame = +3
Query: 6 VKLNAVNTACKATAQILSVDETIKNVKSGEE 98
VKL ++ TA ++ +L VD+ + V+ E
Sbjct: 498 VKLQSIKTAIESACLLLRVDDIVSGVRKHSE 528
>SPAP27G11.12 |||human down-regulated in multiple cancers-1 homolog
1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 797
Score = 24.6 bits (51), Expect = 3.5
Identities = 8/15 (53%), Positives = 11/15 (73%)
Frame = -3
Query: 156 PLSSPIPYEGGPCRD 112
P+S P+P+EGG D
Sbjct: 426 PISMPVPFEGGTYAD 440
>SPBC23G7.08c |rga7||GTPase activating protein
Rga7|Schizosaccharomyces pombe|chr 2|||Manual
Length = 695
Score = 24.6 bits (51), Expect = 3.5
Identities = 10/15 (66%), Positives = 10/15 (66%)
Frame = +1
Query: 1 PSSSLTP*IPPARPP 45
PSSS TP PP PP
Sbjct: 5 PSSSTTPASPPTSPP 19
>SPBC19C7.02 |ubr1|SPBC32F12.14|N-end-recognizing protein
Ubr1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1958
Score = 24.2 bits (50), Expect = 4.6
Identities = 12/28 (42%), Positives = 18/28 (64%)
Frame = +1
Query: 166 LLITDYDHLKSLASTLSRF*YYTYS*CN 249
LL+T+YD L ++ +TL F +TY N
Sbjct: 519 LLVTEYDFLTTINATLYTF--FTYKKLN 544
>SPAC4H3.09 |||mitochondrial type II fatty acid synthase
component|Schizosaccharomyces pombe|chr 1|||Manual
Length = 112
Score = 24.2 bits (50), Expect = 4.6
Identities = 13/30 (43%), Positives = 17/30 (56%)
Frame = +1
Query: 7 SSLTP*IPPARPPLRFYQWMRPSRMSRAVK 96
S++ P IP +P LRFY RP R +K
Sbjct: 13 SAVRPVIPKFQP-LRFYSVARPDAEKRILK 41
>SPBC32H8.11 |mei4||meiotic forkhead transcription factor Mei4
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 517
Score = 23.8 bits (49), Expect = 6.1
Identities = 8/15 (53%), Positives = 11/15 (73%)
Frame = +1
Query: 31 PARPPLRFYQWMRPS 75
P RP RFY++ RP+
Sbjct: 376 PLRPSSRFYEYTRPT 390
>SPBC1711.16 |||WD repeat protein Pwp1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 516
Score = 23.8 bits (49), Expect = 6.1
Identities = 8/17 (47%), Positives = 11/17 (64%)
Frame = +2
Query: 107 AWSRHGPPSYGIGLDNG 157
AW +H ++ IG DNG
Sbjct: 346 AWDQHSENNFFIGTDNG 362
>SPCC1020.05 |||phosphoprotein phosphatase |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 509
Score = 23.8 bits (49), Expect = 6.1
Identities = 9/17 (52%), Positives = 11/17 (64%)
Frame = +1
Query: 28 PPARPPLRFYQWMRPSR 78
P RP L F++W R SR
Sbjct: 65 PFCRPVLEFWKWARTSR 81
>SPAC343.18 |rfp2||ubiquitin-protein ligase E3
Rfp2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 205
Score = 23.4 bits (48), Expect = 8.1
Identities = 17/51 (33%), Positives = 22/51 (43%)
Frame = -2
Query: 253 YYYIRSTYNTKSETV*MRATLSDHSXXXXXXXXXVESYSIRGRSMPRPGIC 101
+Y R T N +S+T R TL ++ S SI R P PG C
Sbjct: 89 FYGARRTRN-RSQT--QRRTLLENGFRNSRKKAQDSSNSIAERVSPPPGFC 136
>SPBC19C2.10 |||BAR adaptor protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 501
Score = 23.4 bits (48), Expect = 8.1
Identities = 13/56 (23%), Positives = 25/56 (44%)
Frame = +3
Query: 12 LNAVNTACKATAQILSVDETIKNVKSGEEAQMPGRGMDRPRME*DSTMANNTANNR 179
+++ N A + I +D+T+K S E P + E D ++ ++NR
Sbjct: 252 ISSTNVATTPSNTIFEMDDTLKADSSSNEYHSPTNTLPSYHTEADLDNSSIASSNR 307
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,055,780
Number of Sequences: 5004
Number of extensions: 17095
Number of successful extensions: 42
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 42
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 42
length of database: 2,362,478
effective HSP length: 63
effective length of database: 2,047,226
effective search space used: 81889040
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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