Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30680
         (311 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_03_1193 - 28298656-28298754,28299303-28299377,28299456-282995...    42   1e-04
07_03_0723 + 20954827-20954905,20954974-20956277                       29   0.77 
03_01_0122 + 954356-954491,954877-955030,955141-955231,955732-95...    29   0.77 
03_05_0319 - 23064997-23065443                                         28   1.8  
03_05_0317 - 23056409-23056855                                         28   1.8  
08_02_0660 - 19768165-19769394,19770500-19770752,19771307-197713...    26   7.2  
03_01_0423 + 3240224-3240394,3241464-3241628,3242322-3242339,324...    25   9.5  

>06_03_1193 -
           28298656-28298754,28299303-28299377,28299456-28299544,
           28299679-28299760,28300385-28300474,28300557-28300655,
           28300733-28300852,28300968-28301084,28301174-28301309,
           28301415-28301584,28301744-28301947,28302032-28302157,
           28302841-28303101,28303215-28303229
          Length = 560

 Score = 41.5 bits (93), Expect = 1e-04
 Identities = 21/34 (61%), Positives = 26/34 (76%)
 Frame = +3

Query: 3   LVKLNAVNTACKATAQILSVDETIKNVKSGEEAQ 104
           +VK+NA+N A +A   ILSVDET+KN KS E AQ
Sbjct: 501 VVKINAINAATEAACLILSVDETVKNPKS-ESAQ 533


>07_03_0723 + 20954827-20954905,20954974-20956277
          Length = 460

 Score = 29.1 bits (62), Expect = 0.77
 Identities = 13/24 (54%), Positives = 16/24 (66%)
 Frame = +1

Query: 169 LITDYDHLKSLASTLSRF*YYTYS 240
           LI D+DH K L  TLS F Y ++S
Sbjct: 136 LIADHDHRKKLPQTLSGFFYTSFS 159


>03_01_0122 +
           954356-954491,954877-955030,955141-955231,955732-955806,
           955884-955972,956084-956202,956338-956478,956817-956893,
           958615-959217
          Length = 494

 Score = 29.1 bits (62), Expect = 0.77
 Identities = 17/53 (32%), Positives = 25/53 (47%)
 Frame = +1

Query: 7   SSLTP*IPPARPPLRFYQWMRPSRMSRAVKRRRCLVAAWTALVWNRTRQWLIT 165
           S+ +P    A P LR     RPSR S   +     ++   AL  +  RQW++T
Sbjct: 8   SAASPSTSSAAPRLRHVARRRPSRRSACPRSAASRLSIMAALGEDPIRQWILT 60


>03_05_0319 - 23064997-23065443
          Length = 148

 Score = 27.9 bits (59), Expect = 1.8
 Identities = 12/32 (37%), Positives = 19/32 (59%)
 Frame = +1

Query: 58  QWMRPSRMSRAVKRRRCLVAAWTALVWNRTRQ 153
           +WMR +   R +KRRR    + T   W+R+R+
Sbjct: 8   RWMRMAGRRRWLKRRRSGACSRTLSAWSRSRR 39


>03_05_0317 - 23056409-23056855
          Length = 148

 Score = 27.9 bits (59), Expect = 1.8
 Identities = 12/32 (37%), Positives = 19/32 (59%)
 Frame = +1

Query: 58  QWMRPSRMSRAVKRRRCLVAAWTALVWNRTRQ 153
           +WMR +   R +KRRR    + T   W+R+R+
Sbjct: 8   RWMRMAGRRRWLKRRRSGACSRTLSAWSRSRR 39


>08_02_0660 -
           19768165-19769394,19770500-19770752,19771307-19771372,
           19771524-19771588,19773265-19773343,19773920-19774293
          Length = 688

 Score = 25.8 bits (54), Expect = 7.2
 Identities = 10/26 (38%), Positives = 12/26 (46%)
 Frame = +1

Query: 79  MSRAVKRRRCLVAAWTALVWNRTRQW 156
           M+ A   R C    WT L W R+  W
Sbjct: 17  MAHAPDTRTCPSQEWTFLAWGRSWTW 42


>03_01_0423 +
           3240224-3240394,3241464-3241628,3242322-3242339,
           3242494-3242836,3244138-3248540,3248928-3249107,
           3249108-3250892,3251055-3252173
          Length = 2727

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 10/25 (40%), Positives = 16/25 (64%)
 Frame = +3

Query: 3   LVKLNAVNTACKATAQILSVDETIK 77
           LVKLN  NT C+   ++ S++  I+
Sbjct: 744 LVKLNLENTVCELKKEVTSLERKIQ 768


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,310,771
Number of Sequences: 37544
Number of extensions: 143074
Number of successful extensions: 349
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 343
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 349
length of database: 14,793,348
effective HSP length: 71
effective length of database: 12,127,724
effective search space used: 388087168
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)