Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30680
         (311 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_22840| Best HMM Match : F5_F8_type_C (HMM E-Value=0)                27   2.3  
SB_10900| Best HMM Match : I-set (HMM E-Value=0)                       26   5.4  
SB_56647| Best HMM Match : rve (HMM E-Value=1.5e-10)                   26   5.4  
SB_54074| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   5.4  
SB_46838| Best HMM Match : Gp-FAR-1 (HMM E-Value=1.2)                  26   7.2  
SB_29189| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   7.2  
SB_8759| Best HMM Match : No HMM Matches (HMM E-Value=.)               25   9.5  
SB_7301| Best HMM Match : S-antigen (HMM E-Value=2.1)                  25   9.5  

>SB_22840| Best HMM Match : F5_F8_type_C (HMM E-Value=0)
          Length = 4002

 Score = 27.5 bits (58), Expect = 2.3
 Identities = 15/37 (40%), Positives = 21/37 (56%), Gaps = 3/37 (8%)
 Frame = +1

Query: 58   QWMR---PSRMSRAVKRRRCLVAAWTALVWNRTRQWL 159
            QW R   P R    +++RR  + AW+A   NR RQW+
Sbjct: 1561 QWDRNHGPERARLHIRKRRGKIGAWSARHNNR-RQWI 1596


>SB_10900| Best HMM Match : I-set (HMM E-Value=0)
          Length = 1642

 Score = 26.2 bits (55), Expect = 5.4
 Identities = 15/42 (35%), Positives = 21/42 (50%)
 Frame = +3

Query: 3   LVKLNAVNTACKATAQILSVDETIKNVKSGEEAQMPGRGMDR 128
           LVK NA+   C+ATA    V    K  +SG   Q+   G+ +
Sbjct: 578 LVKGNAITLPCRATAADAPVITWFKADQSGALQQLTSSGVSQ 619


>SB_56647| Best HMM Match : rve (HMM E-Value=1.5e-10)
          Length = 1347

 Score = 26.2 bits (55), Expect = 5.4
 Identities = 21/58 (36%), Positives = 28/58 (48%), Gaps = 7/58 (12%)
 Frame = +1

Query: 28  PPARPPLRFYQWMRP---SRMSRAVKR----RRCLVAAWTALVWNRTRQWLITLLITD 180
           PPARPPL   Q  +    S +S  V R    R   ++A   +  + T+Q  IT  ITD
Sbjct: 822 PPARPPLAAAQQTKTVQISTVSHGVSRHFNTRAPPISAGPCIAMSTTQQSKITKTITD 879


>SB_54074| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 988

 Score = 26.2 bits (55), Expect = 5.4
 Identities = 13/33 (39%), Positives = 17/33 (51%)
 Frame = -2

Query: 277 CTIY*IKFYYYIRSTYNTKSETV*MRATLSDHS 179
           C    ++FYYYIR    T S T     T+S H+
Sbjct: 53  CRYNMLEFYYYIRDARTTASRTA-RALTISAHT 84


>SB_46838| Best HMM Match : Gp-FAR-1 (HMM E-Value=1.2)
          Length = 512

 Score = 25.8 bits (54), Expect = 7.2
 Identities = 10/37 (27%), Positives = 18/37 (48%)
 Frame = +1

Query: 28  PPARPPLRFYQWMRPSRMSRAVKRRRCLVAAWTALVW 138
           PPARPPL   Q  + S++++ +     +      + W
Sbjct: 316 PPARPPLAAAQQTKQSKITKTITDAAVITGLVAGIGW 352


>SB_29189| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 725

 Score = 25.8 bits (54), Expect = 7.2
 Identities = 15/43 (34%), Positives = 23/43 (53%), Gaps = 4/43 (9%)
 Frame = +3

Query: 15  NAVNTACKATAQ----ILSVDETIKNVKSGEEAQMPGRGMDRP 131
           N  +T  K+T+Q    I S  +  KN+KS  + ++ G  MD P
Sbjct: 368 NIESTCQKSTSQQDKNIKSTSQQDKNIKSTSQQEVKGVDMDNP 410


>SB_8759| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1184

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 9/18 (50%), Positives = 12/18 (66%)
 Frame = +2

Query: 197 RSHLHCLAFSIIRTPNVI 250
           R H+ C A S++ TPN I
Sbjct: 861 RKHMRCQAHSLVGTPNYI 878


>SB_7301| Best HMM Match : S-antigen (HMM E-Value=2.1)
          Length = 682

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 14/37 (37%), Positives = 20/37 (54%)
 Frame = +3

Query: 30  ACKATAQILSVDETIKNVKSGEEAQMPGRGMDRPRME 140
           A    A+ LSV+E    V+ GEE Q P   +D P ++
Sbjct: 376 ASDTDAEALSVEEAELEVEEGEELQSP--TLDEPNIK 410


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,181,827
Number of Sequences: 59808
Number of extensions: 151927
Number of successful extensions: 402
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 391
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 402
length of database: 16,821,457
effective HSP length: 72
effective length of database: 12,515,281
effective search space used: 387973711
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)