Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30680
         (311 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g11830.1 68416.m01450 chaperonin, putative similar to SWISS-P...    43   5e-05
At3g46930.1 68416.m05093 protein kinase family protein contains ...    27   2.6  
At1g77600.1 68414.m09035 expressed protein weak similarity to Pd...    26   4.6  
At2g36770.1 68415.m04510 UDP-glucoronosyl/UDP-glucosyl transfera...    25   8.1  

>At3g11830.1 68416.m01450 chaperonin, putative similar to
           SWISS-PROT:P80313 T-complex protein 1, eta subunit
           (TCP-1-eta) [Mus musculus]; contains Pfam:PF00118
           domain, TCP-1/cpn60 chaperonin family
          Length = 557

 Score = 42.7 bits (96), Expect = 5e-05
 Identities = 23/43 (53%), Positives = 29/43 (67%), Gaps = 4/43 (9%)
 Frame = +3

Query: 3   LVKLNAVNTACKATAQILSVDETIKNVKS----GEEAQMPGRG 119
           +VK+NA+N A +A   ILSVDET+KN KS    G+ A   GRG
Sbjct: 503 VVKINAINAATEAACLILSVDETVKNPKSESAQGDAAGAMGRG 545


>At3g46930.1 68416.m05093 protein kinase family protein contains
           protein kinase domain, Pfam:PF00069
          Length = 475

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 10/28 (35%), Positives = 16/28 (57%)
 Frame = +1

Query: 55  YQWMRPSRMSRAVKRRRCLVAAWTALVW 138
           Y+WM P  + R    R+C V ++  L+W
Sbjct: 324 YRWMAPEVLKRIPHGRKCDVYSFGLLLW 351


>At1g77600.1 68414.m09035 expressed protein weak similarity to Pds5
           (GI:16751524) [Schizosaccharomyces pombe]; weak
           similarity to androgen-induced prostate proliferative
           shutoff associated protein (GI:4559410) [Homo sapiens]
          Length = 1285

 Score = 26.2 bits (55), Expect = 4.6
 Identities = 13/29 (44%), Positives = 17/29 (58%)
 Frame = +1

Query: 133 VWNRTRQWLITLLITDYDHLKSLASTLSR 219
           V  R R W+    I ++ HLKSL S LS+
Sbjct: 487 VEERMRHWVQCFAIMNHIHLKSLNSILSQ 515


>At2g36770.1 68415.m04510 UDP-glucoronosyl/UDP-glucosyl transferase
           family protein contains Pfam profile: PF00201
           UDP-glucoronosyl and UDP-glucosyl transferase
          Length = 496

 Score = 25.4 bits (53), Expect = 8.1
 Identities = 9/27 (33%), Positives = 13/27 (48%)
 Frame = +1

Query: 55  YQWMRPSRMSRAVKRRRCLVAAWTALV 135
           Y+WM  S     +K R  L+  W+  V
Sbjct: 334 YEWMMESGFEERIKERGLLIKGWSPQV 360


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,591,395
Number of Sequences: 28952
Number of extensions: 97342
Number of successful extensions: 204
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 202
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 204
length of database: 12,070,560
effective HSP length: 70
effective length of database: 10,043,920
effective search space used: 331449360
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)