Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV30679
(703 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC1739.13 |ssa2||heat shock protein Ssa2|Schizosaccharomyces p... 165 4e-42
SPAC13G7.02c |ssa1||heat shock protein Ssa1|Schizosaccharomyces ... 161 9e-41
SPBC1709.05 |sks2|hsc1|heat shock protein Sks2|Schizosaccharomyc... 138 7e-34
SPAC22A12.15c |bip1|bip|BiP |Schizosaccharomyces pombe|chr 1|||M... 136 4e-33
SPAC664.11 |ssc1|ssp1|Hsp70 chaperone mtHsp70|Schizosaccharomyce... 124 9e-30
SPAC110.04c |pss1|ssp1, SPAP14E8.01c|heat shock protein Pss1|Sch... 65 8e-12
SPAC57A7.12 |||heat shock protein Pdr13 |Schizosaccharomyces pom... 59 7e-10
SPAC1F5.06 |||heat shock protein Lhs1 |Schizosaccharomyces pombe... 46 5e-06
SPBC18A7.01 ||SPBC4F6.19c|X-Pro dipeptidase |Schizosaccharomyces... 31 0.21
SPBC2D10.17 |clr1||cryptic loci regulator Clr1|Schizosaccharomyc... 29 0.85
SPCC1450.12 |||conserved fungal protein|Schizosaccharomyces pomb... 26 4.5
SPCC320.09 |hem15||ferrochelatase|Schizosaccharomyces pombe|chr ... 26 4.5
SPBC2D10.12 |rhp23||Rad23 homolog Rhp23|Schizosaccharomyces pomb... 26 4.5
SPAC17G8.02 |||uridine ribohydrolase |Schizosaccharomyces pombe|... 25 7.9
SPBC25H2.05 |egd2|nac1|nascent polypeptide-associated complex al... 25 7.9
SPAC4G9.04c |||cleavage and polyadenylation specificity factor |... 25 7.9
>SPCC1739.13 |ssa2||heat shock protein Ssa2|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 647
Score = 165 bits (402), Expect = 4e-42
Identities = 76/93 (81%), Positives = 84/93 (90%)
Frame = +1
Query: 1 VEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVAMNPNNTIFDAKRLIGRKFEHATVQA 180
VEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVAMNP+NTIFDAKRLIGRKF+ VQ+
Sbjct: 24 VEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVAMNPHNTIFDAKRLIGRKFDDPEVQS 83
Query: 181 DMKHWPFEVISDGGKPKIKVAYKGETKPFSPRK 279
DMKHWPF+VIS GKP ++V YKGETK F+P +
Sbjct: 84 DMKHWPFKVISKDGKPVLQVEYKGETKTFTPEE 116
Score = 142 bits (345), Expect = 3e-35
Identities = 70/88 (79%), Positives = 76/88 (86%)
Frame = +3
Query: 249 G*DKTFFPEEVSSMVLTKMKETAEAYLGKTVQNAVITVPAYFNDSQRQATKDAGTISGLN 428
G KTF PEE+SSMVL KM+ETAEAYLG V +AV+TVPAYFNDSQRQATKDAG I+GLN
Sbjct: 107 GETKTFTPEEISSMVLMKMRETAEAYLGGKVTDAVVTVPAYFNDSQRQATKDAGLIAGLN 166
Query: 429 VLRIINEPTAAAIAYGLDKKGTGERNVL 512
VLRIINEPTAAAIAYGLD+ GE NVL
Sbjct: 167 VLRIINEPTAAAIAYGLDRSNQGESNVL 194
Score = 120 bits (288), Expect = 3e-28
Identities = 53/65 (81%), Positives = 61/65 (93%)
Frame = +2
Query: 509 LIFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNRMVNHFVQEFKRKYKKDLAT 688
LIFDLGGGTFDVS+LTIE+GIFEVK+TAGDTHLGGEDFD+R+VNHF+QEFKRK KKD+
Sbjct: 194 LIFDLGGGTFDVSLLTIEEGIFEVKATAGDTHLGGEDFDSRLVNHFIQEFKRKNKKDITG 253
Query: 689 NKRAL 703
N RA+
Sbjct: 254 NARAV 258
>SPAC13G7.02c |ssa1||heat shock protein Ssa1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 644
Score = 161 bits (391), Expect = 9e-41
Identities = 74/93 (79%), Positives = 82/93 (88%)
Frame = +1
Query: 1 VEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVAMNPNNTIFDAKRLIGRKFEHATVQA 180
VEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVAMNP+NTIFDAKRLIGR+F VQ+
Sbjct: 24 VEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVAMNPHNTIFDAKRLIGRRFNDPEVQS 83
Query: 181 DMKHWPFEVISDGGKPKIKVAYKGETKPFSPRK 279
DMKHWPF+VI GKP I+V +KGETK F+P +
Sbjct: 84 DMKHWPFKVIEKDGKPLIQVEFKGETKTFTPEE 116
Score = 136 bits (329), Expect = 3e-33
Identities = 67/88 (76%), Positives = 75/88 (85%)
Frame = +3
Query: 249 G*DKTFFPEEVSSMVLTKMKETAEAYLGKTVQNAVITVPAYFNDSQRQATKDAGTISGLN 428
G KTF PEE+SSMVL KM+E+AEA+LG V +AV+TVPAYFNDSQRQATKDAG I+GLN
Sbjct: 107 GETKTFTPEEISSMVLLKMRESAEAFLGGKVTDAVVTVPAYFNDSQRQATKDAGLIAGLN 166
Query: 429 VLRIINEPTAAAIAYGLDKKGTGERNVL 512
VLRIINEPTAAAIAYGLD+ E NVL
Sbjct: 167 VLRIINEPTAAAIAYGLDRSNQHETNVL 194
Score = 120 bits (289), Expect = 2e-28
Identities = 54/68 (79%), Positives = 61/68 (89%)
Frame = +2
Query: 500 TKCLIFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNRMVNHFVQEFKRKYKKD 679
T LIFDLGGGTFDVS+LTIE+GIFEVK+TAGDTHLGGEDFD+R+VNHF QEFKRK KKD
Sbjct: 191 TNVLIFDLGGGTFDVSLLTIEEGIFEVKATAGDTHLGGEDFDSRLVNHFAQEFKRKNKKD 250
Query: 680 LATNKRAL 703
+ N RA+
Sbjct: 251 ITGNARAV 258
>SPBC1709.05 |sks2|hsc1|heat shock protein Sks2|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 613
Score = 138 bits (334), Expect = 7e-34
Identities = 62/93 (66%), Positives = 75/93 (80%)
Frame = +1
Query: 1 VEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVAMNPNNTIFDAKRLIGRKFEHATVQA 180
VEII NDQG RTTPS+VAFT+TERL+GDAAKNQ AMNP NT+FDAKRLIGR++E Q
Sbjct: 28 VEIIPNDQGARTTPSFVAFTETERLVGDAAKNQAAMNPRNTVFDAKRLIGRRYEDPETQK 87
Query: 181 DMKHWPFEVISDGGKPKIKVAYKGETKPFSPRK 279
D+KHWPF+VI + G P I+V Y GE K F+ ++
Sbjct: 88 DIKHWPFKVIDNNGIPTIEVNYLGEKKQFTAQE 120
Score = 125 bits (301), Expect = 7e-30
Identities = 63/88 (71%), Positives = 71/88 (80%)
Frame = +3
Query: 249 G*DKTFFPEEVSSMVLTKMKETAEAYLGKTVQNAVITVPAYFNDSQRQATKDAGTISGLN 428
G K F +E+S+MVLTKMKE +EA L K V+ AVITVPAYF+DSQR ATKDAG I+GLN
Sbjct: 111 GEKKQFTAQEISAMVLTKMKEISEAKLNKRVEKAVITVPAYFSDSQRAATKDAGAIAGLN 170
Query: 429 VLRIINEPTAAAIAYGLDKKGTGERNVL 512
VLRIINEPTAAAIAYGLD K +NVL
Sbjct: 171 VLRIINEPTAAAIAYGLDAKSDKPKNVL 198
Score = 106 bits (254), Expect = 4e-24
Identities = 47/65 (72%), Positives = 56/65 (86%)
Frame = +2
Query: 509 LIFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNRMVNHFVQEFKRKYKKDLAT 688
LIFDLGGGTFDVS+L I+ G+FEV +TAGDTHLGGEDFDN +V HF+QEFKRK K D++
Sbjct: 198 LIFDLGGGTFDVSLLKIQGGVFEVLATAGDTHLGGEDFDNALVEHFIQEFKRKQKIDISD 257
Query: 689 NKRAL 703
+ RAL
Sbjct: 258 DPRAL 262
>SPAC22A12.15c |bip1|bip|BiP |Schizosaccharomyces pombe|chr
1|||Manual
Length = 663
Score = 136 bits (328), Expect = 4e-33
Identities = 64/88 (72%), Positives = 79/88 (89%)
Frame = +3
Query: 249 G*DKTFFPEEVSSMVLTKMKETAEAYLGKTVQNAVITVPAYFNDSQRQATKDAGTISGLN 428
G K F PEE+S+M+L+KMK+TAEAYLGK V +AV+TVPAYFND+QRQATKDAGTI+GLN
Sbjct: 140 GKKKKFTPEEISAMILSKMKQTAEAYLGKPVTHAVVTVPAYFNDAQRQATKDAGTIAGLN 199
Query: 429 VLRIINEPTAAAIAYGLDKKGTGERNVL 512
V+RI+NEPTAAAIAYGLDK T E++++
Sbjct: 200 VIRIVNEPTAAAIAYGLDKTDT-EKHIV 226
Score = 124 bits (299), Expect = 1e-29
Identities = 55/93 (59%), Positives = 71/93 (76%)
Frame = +1
Query: 1 VEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVAMNPNNTIFDAKRLIGRKFEHATVQA 180
VEIIANDQGNR TPSYVAFT+ ERL+G+AAKNQ NP NTIFD KRLIGRKF+ T+
Sbjct: 57 VEIIANDQGNRITPSYVAFTEDERLVGEAAKNQAPSNPENTIFDIKRLIGRKFDEKTMAK 116
Query: 181 DMKHWPFEVISDGGKPKIKVAYKGETKPFSPRK 279
D+K +PF +++D +P ++V G+ K F+P +
Sbjct: 117 DIKSFPFHIVNDKNRPLVEVNVGGKKKKFTPEE 149
Score = 89.4 bits (212), Expect = 4e-19
Identities = 35/65 (53%), Positives = 54/65 (83%)
Frame = +2
Query: 509 LIFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNRMVNHFVQEFKRKYKKDLAT 688
+++DLGGGTFDVS+L+I++G+FEV +T+GDTHLGGEDFDNR++N+ + + RK D+
Sbjct: 226 VVYDLGGGTFDVSLLSIDNGVFEVLATSGDTHLGGEDFDNRVINYLARTYNRKNNVDVTK 285
Query: 689 NKRAL 703
+ +A+
Sbjct: 286 DLKAM 290
>SPAC664.11 |ssc1|ssp1|Hsp70 chaperone mtHsp70|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 674
Score = 124 bits (300), Expect = 9e-30
Identities = 55/77 (71%), Positives = 67/77 (87%)
Frame = +3
Query: 258 KTFFPEEVSSMVLTKMKETAEAYLGKTVQNAVITVPAYFNDSQRQATKDAGTISGLNVLR 437
KT+ P ++ +L+KM+ETA YLGK V+NAV+TVPAYFNDSQRQATK AG I+GLNVLR
Sbjct: 156 KTYSPSQIGGFILSKMRETASTYLGKDVKNAVVTVPAYFNDSQRQATKAAGAIAGLNVLR 215
Query: 438 IINEPTAAAIAYGLDKK 488
++NEPTAAA+AYGLDKK
Sbjct: 216 VVNEPTAAALAYGLDKK 232
Score = 87.0 bits (206), Expect = 2e-18
Identities = 37/64 (57%), Positives = 50/64 (78%)
Frame = +2
Query: 512 IFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNRMVNHFVQEFKRKYKKDLATN 691
+FDLGGGTFD+SIL + +G+FEV+ST GDTHLGGEDFD +V H V+ FK+ DL+ +
Sbjct: 239 VFDLGGGTFDISILELNNGVFEVRSTNGDTHLGGEDFDVALVRHIVETFKKNEGLDLSKD 298
Query: 692 KRAL 703
+ A+
Sbjct: 299 RLAV 302
Score = 82.6 bits (195), Expect = 5e-17
Identities = 38/70 (54%), Positives = 51/70 (72%), Gaps = 1/70 (1%)
Frame = +1
Query: 4 EIIANDQGNRTTPSYVAFT-DTERLIGDAAKNQVAMNPNNTIFDAKRLIGRKFEHATVQA 180
++IAN +G RTTPS VAFT D ERL+G +AK Q +NP NT F KRLIGR+F+ VQ
Sbjct: 73 KVIANAEGTRTTPSVVAFTKDGERLVGVSAKRQAVINPENTFFATKRLIGRRFKEPEVQR 132
Query: 181 DMKHWPFEVI 210
D+K P++++
Sbjct: 133 DIKEVPYKIV 142
>SPAC110.04c |pss1|ssp1, SPAP14E8.01c|heat shock protein
Pss1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 720
Score = 65.3 bits (152), Expect = 8e-12
Identities = 31/63 (49%), Positives = 45/63 (71%)
Frame = +3
Query: 297 TKMKETAEAYLGKTVQNAVITVPAYFNDSQRQATKDAGTISGLNVLRIINEPTAAAIAYG 476
TK+K AEA L +V + VI++PA+F D QR+A +A I+GLN LR++N+ AAA+ YG
Sbjct: 127 TKIKAIAEAELIGSVSDVVISIPAWFTDIQRRALLEAANIAGLNPLRLMNDNAAAALTYG 186
Query: 477 LDK 485
+ K
Sbjct: 187 ITK 189
Score = 57.2 bits (132), Expect = 2e-09
Identities = 25/63 (39%), Positives = 37/63 (58%)
Frame = +2
Query: 512 IFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNRMVNHFVQEFKRKYKKDLATN 691
I D G + VSI+ G F +KST D +LG + D ++++F EFK KYK D+ +N
Sbjct: 203 IVDFGHSNYSVSIVEFSRGQFHIKSTVCDRNLGSRNMDKALIDYFAAEFKEKYKIDVLSN 262
Query: 692 KRA 700
+A
Sbjct: 263 PKA 265
Score = 54.4 bits (125), Expect = 1e-08
Identities = 29/91 (31%), Positives = 50/91 (54%), Gaps = 1/91 (1%)
Frame = +1
Query: 1 VEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVAMNPNNTIFDAKRLIGRKFEHATVQA 180
+++I N+ NR+TPS V++ + R +G+AAK+ A N NT+ KRL GR ++ ++
Sbjct: 27 IDVIVNEVSNRSTPSLVSYGERSRFLGEAAKSAEASNFRNTVGSLKRLAGRTYDDPEIKD 86
Query: 181 DMKHWPFEVISD-GGKPKIKVAYKGETKPFS 270
++ +++ G KV Y E FS
Sbjct: 87 IESNFISAKLTEVDGFVGAKVQYLNEETAFS 117
>SPAC57A7.12 |||heat shock protein Pdr13 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 566
Score = 58.8 bits (136), Expect = 7e-10
Identities = 28/72 (38%), Positives = 44/72 (61%)
Frame = +3
Query: 255 DKTFFPEEVSSMVLTKMKETAEAYLGKTVQNAVITVPAYFNDSQRQATKDAGTISGLNVL 434
+K E S L ++ E+AE +LG V V++VP YF D+QR+A + A +GL VL
Sbjct: 135 EKILTAHEASVRHLRRLTESAEDFLGTKVNGCVMSVPVYFTDAQRKALESAANEAGLPVL 194
Query: 435 RIINEPTAAAIA 470
++I++P A +A
Sbjct: 195 QLIHDPAAVILA 206
Score = 44.4 bits (100), Expect = 2e-05
Identities = 19/65 (29%), Positives = 39/65 (60%)
Frame = +2
Query: 509 LIFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNRMVNHFVQEFKRKYKKDLAT 688
++ + G +VS+++++ G+ + ++ D +LGGE + +VN F +EF++K D
Sbjct: 220 VVANFGATRSEVSVVSVKGGLMTILASVHDENLGGEQLTDVLVNFFAKEFEKKNGIDPRK 279
Query: 689 NKRAL 703
N R+L
Sbjct: 280 NARSL 284
Score = 40.7 bits (91), Expect = 2e-04
Identities = 15/57 (26%), Positives = 35/57 (61%)
Frame = +1
Query: 4 EIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVAMNPNNTIFDAKRLIGRKFEHATV 174
+++AN++GNR PS +++ + G A+ Q+ N +N++ + + L+G+ + T+
Sbjct: 47 DVLANEEGNRQIPSILSYHGDQEYHGVQARGQLVRNADNSVTNFRDLLGKSHDELTL 103
>SPAC1F5.06 |||heat shock protein Lhs1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 848
Score = 46.0 bits (104), Expect = 5e-06
Identities = 23/77 (29%), Positives = 41/77 (53%)
Frame = +3
Query: 255 DKTFFPEEVSSMVLTKMKETAEAYLGKTVQNAVITVPAYFNDSQRQATKDAGTISGLNVL 434
++ + EE+ +M + AE + + + V+TVP +FN+ QR +A I +VL
Sbjct: 132 EENYSLEEIIAMTMEHYISLAEEMAHEKITDLVLTVPPHFNELQRSILLEAARILNKHVL 191
Query: 435 RIINEPTAAAIAYGLDK 485
+I++ A AI Y L +
Sbjct: 192 ALIDDNVAVAIEYSLSR 208
Score = 29.9 bits (64), Expect = 0.37
Identities = 20/67 (29%), Positives = 28/67 (41%), Gaps = 1/67 (1%)
Frame = +1
Query: 1 VEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVAMNPNNTIFDAKRLIGRK-FEHATVQ 177
+EI+ R S VAF ER+ G A N P ++I + K L+ E VQ
Sbjct: 45 LEIVLTKDTRRKEQSAVAFKGNERIFGVDASNLATRFPAHSIRNVKELLDTAGLESVLVQ 104
Query: 178 ADMKHWP 198
+P
Sbjct: 105 KYQSSYP 111
>SPBC18A7.01 ||SPBC4F6.19c|X-Pro dipeptidase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 451
Score = 30.7 bits (66), Expect = 0.21
Identities = 19/73 (26%), Positives = 33/73 (45%)
Frame = +1
Query: 49 VAFTDTERLIGDAAKNQVAMNPNNTIFDAKRLIGRKFEHATVQADMKHWPFEVISDGGKP 228
+ F+D E GD A + P + AK L+G+ + + D P++V+ D P
Sbjct: 125 IIFSDDEPYPGDVASRIYFLVPKFELPRAKELVGKNIDAKYITWDEDENPYQVLYDRLGP 184
Query: 229 KIKVAYKGETKPF 267
+K+ G + F
Sbjct: 185 -LKLMIDGTVRNF 196
>SPBC2D10.17 |clr1||cryptic loci regulator Clr1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1238
Score = 28.7 bits (61), Expect = 0.85
Identities = 16/37 (43%), Positives = 21/37 (56%)
Frame = -2
Query: 624 SKSSPPKWVSPAVDFTSKIPSSMVRMDTSKVPPPRSK 514
+KSSP K VSP V SK +S V + S +P +K
Sbjct: 203 NKSSPVKHVSPNVKNNSKKTASSVNSNHSSIPSSITK 239
>SPCC1450.12 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 821
Score = 26.2 bits (55), Expect = 4.5
Identities = 11/39 (28%), Positives = 22/39 (56%)
Frame = -2
Query: 561 SMVRMDTSKVPPPRSKIRHFVLQYPFCQDRKQSQQQSVH 445
S++ + S++P R + F+L +PF Q+Q +V+
Sbjct: 52 SVIPYEKSQIPVLRFIFKRFILTFPFLDPDSQNQLWNVN 90
>SPCC320.09 |hem15||ferrochelatase|Schizosaccharomyces pombe|chr
3|||Manual
Length = 384
Score = 26.2 bits (55), Expect = 4.5
Identities = 12/27 (44%), Positives = 15/27 (55%)
Frame = -2
Query: 660 LNSWTKWLTMRLSKSSPPKWVSPAVDF 580
LN K++ SK P W+SPA DF
Sbjct: 256 LNYKNKFVNAWQSKVGPLPWMSPATDF 282
>SPBC2D10.12 |rhp23||Rad23 homolog Rhp23|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 368
Score = 26.2 bits (55), Expect = 4.5
Identities = 19/65 (29%), Positives = 30/65 (46%), Gaps = 6/65 (9%)
Frame = +3
Query: 480 DKKGTGERNVLS----LTSAAVPSTCPSLPSRMVSSR*NPPPATPTWEVR--TLTIAWST 641
D K GE N+ + + P T S P S NPP + P +V + T+A ST
Sbjct: 53 DDKTVGEYNIKEQDFIVCMVSRPKTSTSTPKSAASPAPNPPASVPEKKVEAPSSTVAEST 112
Query: 642 TLSRS 656
+ +++
Sbjct: 113 STTQT 117
>SPAC17G8.02 |||uridine ribohydrolase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 330
Score = 25.4 bits (53), Expect = 7.9
Identities = 14/42 (33%), Positives = 23/42 (54%)
Frame = -2
Query: 255 LTLICYLDLRFASITDNLERPVLHVGLHSSMFELTSDETFGI 130
LT I L + S+TDN+ER + +G + + +TS F +
Sbjct: 141 LTNIALLLATYPSVTDNIER-FIFMGGSTGIGNITSQAEFNV 181
>SPBC25H2.05 |egd2|nac1|nascent polypeptide-associated complex alpha
subunit Egd2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 173
Score = 25.4 bits (53), Expect = 7.9
Identities = 12/41 (29%), Positives = 20/41 (48%)
Frame = +3
Query: 279 VSSMVLTKMKETAEAYLGKTVQNAVITVPAYFNDSQRQATK 401
++ ++ K A LGK + FN+SQ+QAT+
Sbjct: 57 INEPIVYKSSNNAYIVLGKVTVEDMAAQARAFNESQKQATE 97
>SPAC4G9.04c |||cleavage and polyadenylation specificity factor
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 638
Score = 25.4 bits (53), Expect = 7.9
Identities = 10/27 (37%), Positives = 18/27 (66%)
Frame = +3
Query: 528 AVPSTCPSLPSRMVSSR*NPPPATPTW 608
++PST P++PS +S + PP T ++
Sbjct: 299 SIPSTIPTIPSAYSASVSSQPPLTHSY 325
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,067,502
Number of Sequences: 5004
Number of extensions: 64945
Number of successful extensions: 231
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 204
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 230
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 325165428
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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